rs249982939 SNP Detail

Summary

• ID
  rs249982939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99772423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTACAT TTACCATATA
  GTTCTTTCTA GTGCCCTGCA ATCCTACTAA TGCTTTTCCG TTTACAGAAC AAAACTACTG
  CCCCCTTGCT TTCTCCCTTA AAAAGGAAGT GGGGGGGGGG GGACAAGGAT TATTCCTTAC
  CTTATGCCAG ATTTCTTGTC TCCAGTTAGA AGCCAGAAGG GGGGCCAGCC ATGCAGTACC
  Y
  CATACAGGCT ATATTTGAAA CCTTTTGGGA GTTTGCAAGC CTTGAGGCTC ATCCATGCAT
  ATCGAATGCT GTCCCCACCC CACCACCCCC AAAAGGCTCT CAAACCATCC CCACGTACAA
  GAAAACAAGA CTCTAGAATC CACCACAACC CAAGCAAAGG AAATTGAAAA ACAACCTGCC
  AAGAATGACT CCCAGTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404170212	MGP_WTSI_X_97924156	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs249982939					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170212	MGP_WTSI_X_97924156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99772423 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	1056 bp upstream
Gm52438	predicted gene, 52438	within coordinates
Kif4	kinesin family member 4	1545 bp downstream
Rr692772	regulatory region 692772	635 bp proximal
Rr692773	regulatory region 692773	1244 bp proximal
Rr692774	regulatory region 692774	1380 bp proximal
Tssr161618	transcription start site region 161618	1001 bp upstream
Tssr161619	transcription start site region 161619	1019 bp upstream
Tssr161620	transcription start site region 161620	1100 bp upstream
Tssr161621	transcription start site region 161621	1163 bp upstream
Tssr161622	transcription start site region 161622	1302 bp upstream
Tssr161623	transcription start site region 161623	1309 bp upstream
Tssr161624	transcription start site region 161624	1339 bp upstream
Tssr161625	transcription start site region 161625	1361 bp upstream