rs249985458 SNP Detail

Summary

• ID
  rs249985458
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118858013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTTTTA AAAATACTTT
  TTTCAACTAC AGTTAGGGTC ACTAAAAGTA CACCGCCATC AAACGTGCCT TGGCATTCCC
  AGAGTTCTGG ATCCCTGCTG GGTCTGGCCA GCATGTACTC TCATCTCCCC TTCTCCCTCT
  GGAAATTTCT CTCTTCTCTG GGGAGGGTGG GGGGGGGCTT CTTTTCCCTT TCTATTAATT
  W
  ATTTATTTAT TCACTTTACA TCCCAGCCAC AGGCCCTTCT TCCACTTCCC CCTCACACAG
  CCCTTCCCCA TCCCCTCTTC CTCTTCACCT CTGAGGAGGA GCTCCCTGCC CCCCCACCCC
  CAATCCCACC CCCACCCCCA CCCTGTACCA ACCCACCCTC GAACCTCAAG TCACTACAAG
  GCTAGAGACA TCCTCTCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss363006516	MGP_WTSI_4_118673421	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs249985458					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363006516	MGP_WTSI_4_118673421	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118858013 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	1358 bp downstream
Gm12862	predicted gene 12862	331 bp upstream
Rr398425	regulatory region 398425	963 bp downstream
Rr598452	regulatory region 598452	1373 bp distal
Rr598453	regulatory region 598453	342 bp distal
Rr598454	regulatory region 598454	241 bp distal
Rr598455	regulatory region 598455	878 bp proximal