rs249987266 SNP Detail

Summary

• ID
  rs249987266
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11888825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTAGAGC TGTATCATTC
  CAGCTCTTCA CTGCTCTAAC CAGGCCCTCG GCTTTGCAGA TTGTGTAACG GATATGTGGT
  TGGTTGTCTT CTGGGGCTTA GGGCTTACTG TCAACAGGTA GCACACTAGT GACCACGGAA
  AGGCGAGCTT CTCTGACTAG AAGAGGGGTC TCATTCACCA CTGACCCAGT GTCCGCCTGG
  S
  AAGTGAAGGC AGAAAGAGGG TGCACAGGTC ACAGAAACCC CACTGGAACA CTCACCGCTG
  CCAACGATAG TGTTTGTGTA AAAAATATAA ACGTGTGTTC GAAACCATGG TGCAAGATAG
  AATATTTGTC TAGAGATCAG TTTTCAATAG GCCAGGAGCA AGATAGTCGA TTTTTATTAA
  TAACGAAAAG TATTAAATAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494089	CHEV_8_11838825	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249987266					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11888825 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	137 bp downstream
Tex29	testis expressed 29	1663 bp upstream
Tssr76253	transcription start site region 76253	1676 bp upstream
Tssr76254	transcription start site region 76254	1689 bp upstream
Tssr76255	transcription start site region 76255	1743 bp upstream