rs249991687 SNP Detail

Summary

• ID
  rs249991687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108535152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGGCA GAGAGTGGAC
  GCAAGGAAAT AGAGCTCGCA GGTCAAGGCG TGACAGAACT GCAGCATGAG AGGGGTTTGG
  GTGAGTTCTA GAGCTGCCGT TGTGCATACA AGAAGAAAGG ACAGAGTGTG GCTTGGGCTT
  GGTATTCCTT GTGAGGTGCC CCTGAGTGTA CCAGTGGGTT GGTCAAGTAG AAAATTGAGT
  R
  AGCAGGGCTG CCAGGGCGCT TCACTGCCTG CCCGTGCTTC ACTTCCCAGA GCCCACATGA
  TGGAAGGAGA AAACCTGCAG ACGGTCCTCT GACTTCCATG GGCAAGCAGT TGCACATCCA
  TAATTAATCA GTATAAAAGA AAGGCAAATT TTAACAGTAC GTGTGAAGAT GCAAATGTAA
  AGAGGTGTGG GCAAGTATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388653	CHEV_7_116079459	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249991687					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108535152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1036 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	1487 bp downstream
Rr652952	regulatory region 652952	1518 bp distal
Rr652953	regulatory region 652953	1775 bp distal
Tssr68456	transcription start site region 68456	1515 bp downstream
Tssr68457	transcription start site region 68457	1417 bp downstream