rs249993330 SNP Detail

Summary

• ID
  rs249993330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119391280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCATCAT TAAAAAATCA
  ATTCCCTTAA AAGCTTATTC CAATACCCAA AGCAGTGAGA AGCAAAGTTA TAATAAAGCT
  GTGCCATGGA ATAAGTCAGA ATATCAAAAG TATGCCCATT TTGTTTTACA ATTAAACATG
  AACACAGCAT GAATTAAAAT ATACTTTACT ATTGAAAAGC CTTTTTTTTT CCAGTTGTAT
  Y
  TAATCAAAGT TTTAAATGTA ATCTTAAAAC AACTAGCTAC TTTGGATAAT CACATTCAGG
  TATTTGGTAT TTTATTCTTT TGTAGGTCAG AGTTTTTATA TTAAACTACG AGCTTACAGC
  ATTGTTTTCT TATTGGCTGG CTTATATCTA GGATGTTTAA GAAGACTCCT AGAGCACTAG
  CTTTGGCCAC TGGCCATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372922715	MGP_WTSI_7_126935571	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs249993330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372922715	MGP_WTSI_7_126935571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119391280 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	1610 bp proximal
Eri2	exoribonuclease 2	within coordinates
Rexo5	RNA exonuclease 5	1949 bp upstream
Rr654660	regulatory region 654660	1340 bp proximal
Rr654661	regulatory region 654661	1900 bp proximal
Rr654662	regulatory region 654662	1991 bp proximal
Tssr68757	transcription start site region 68757	1684 bp upstream
Tssr68758	transcription start site region 68758	1930 bp upstream
Tssr68759	transcription start site region 68759	1964 bp upstream
Tssr74500	transcription start site region 74500	1888 bp downstream
Tssr74501	transcription start site region 74501	1901 bp downstream