rs249996755 SNP Detail

Summary

• ID
  rs249996755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70988267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATAGCG TTCTGTCTAT
  AATGTTATCA TCTTGGATAA CACTTCGTTA GTGCAATAAA CGTGTCCCGA GTGGCAAGGC
  TCGATTGCTC AGCCTGCTCC ATGCTAAGCA AGACAGTCAG AATTTGATCC TTGAACTCCC
  ACAAGTTGTC CTCCGACCTC CACAGTGCCA TGCACCCTAC ACACATAATA AATAAATGTC
  Y
  GAAATGCCTC GAGTCCCTAT GGATTTTTTT TTTTTAAGTT TTATTCTGAA AGTAGTGCAA
  AGTCCAAAGT TAGAGCATGA ACATTCCTTG TAAGGTCATG ATGTGTCAGA ATTCGAAGTA
  AGAGGATCAG AAGAGGGTTG GAGATGCAGG TGACAGAGGG TGGGTTTCAA ACACAATAGG
  CTTTCCCTTG CCTTCTAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417462	CHEV_13_70979026	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249996755					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70988267 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	1089 bp proximal
Gm36529	predicted gene, 36529	302 bp upstream
Tssr123158	transcription start site region 123158	1555 bp downstream
Tssr123159	transcription start site region 123159	1581 bp downstream
Tssr123160	transcription start site region 123160	1614 bp downstream
Tssr123161	transcription start site region 123161	1642 bp downstream