rs249998282 SNP Detail

Summary

• ID
  rs249998282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149326651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTTGTGA CAGTCATTGA ACTTATGTCA
  TACCTAAGAA ACAAATTCAT ATTAACACAA AAAATAAAAG CAAAAAAAGA GCTTGAATGT
  TGAACATCAT ATGTAAATTC TAGCAAAAGA ATCACAAGCC CACAAAAATA ATATCTCTCT
  Y
  GTTTCTGTTA TGTTACTACA TACAAAAAAC AGCTAAATTA TTTCTGCCAT TCGTTTATTC
  TATTTCCTTT CCCTAAAGAA ATCTATCACC TTCCAGAGAT TAGGTATAGA AATCTATACC
  AGtgtagtgg ctattcctgg ttgtcaactt                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320039562	CHEV_1_151298033	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs249998282					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149326651 () rs orientation: forward

Symbol	Name	Function Class
Gm29398	predicted gene 29398	934 bp upstream
Rr30991	regulatory region 30991	452 bp distal
Tssr14116	transcription start site region 14116	947 bp upstream
Tssr14117	transcription start site region 14117	929 bp upstream