rs250006798 SNP Detail

Summary

• ID
  rs250006798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:13012074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAATGTG CAGCTGTTGC
  CCCTCAGATA TGACTGCCTT GAACTGCTAC TTTGATCTGT GTTTTTTGCT TCCCAGAGAT
  GCTCTTATCT CCAGATGTGC TGCCCATGTC CAGTCAGGGA TCATTCGCCT ACAGGGGTGT
  GGCCCACTTG TGGCAAATTC AACTCAGAAG TGTCACCAAT AGTCATCTTT GGTCCATACT
  Y
  CTAAGACTTA TTCTCCTCCT GGGCCAAGTT GCAGTCCCCT CTTCCCAGAA ATTGCTACTA
  TTCTCAATGT GTATCTTCGT TTTGGACACG GCGCCTTGTC CTCAGATGGG CTTCTTCACT
  ACTAATGCTC CCCCGGGCCC CCACGTCCCG CTGAGCCTCT TGTCCCTTGC ACAGCCCCTT
  TTATCCAGTT CCCACCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370658910	MGP_WTSI_7_13863497	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250006798					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370658910	MGP_WTSI_7_13863497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:13012074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18339	CpG island 18339	169 bp proximal
Lig1	ligase I, DNA, ATP-dependent	within coordinates
Rr400108	regulatory region 400108	493 bp upstream
Rr642459	regulatory region 642459	15 bp distal
Rr642460	regulatory region 642460	within coordinates
Rr642461	regulatory region 642461	278 bp proximal
Rr642462	regulatory region 642462	525 bp proximal
Rr642463	regulatory region 642463	679 bp proximal
Rr642464	regulatory region 642464	1128 bp proximal
Tssr64537	transcription start site region 64537	934 bp downstream
Tssr64538	transcription start site region 64538	878 bp downstream
Tssr64539	transcription start site region 64539	396 bp upstream
Tssr64540	transcription start site region 64540	630 bp upstream
Tssr64541	transcription start site region 64541	728 bp upstream
Tssr70659	transcription start site region 70659	513 bp downstream
Zswim9	zinc finger SWIM-type containing 9	within coordinates