rs250027699 SNP Detail

Summary

• ID
  rs250027699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:118308394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGCCA ATATAAAGTC
  TTTAAAGTCA GTATACAAGG TTTTAATTCC TTCAGTGTTG GCATTTAAGA CAAGCTTTCC
  AGAAATTCTC AACACTCACT GGCTTCTAAT AGGTATTTTC ATGCCTCTTG ACAGAGAGGG
  GAAGGAGTGT GGACTGCCAT CCACTGTCCT CAAAGGACAG ATACTAACAC GCACTGGAAC
  R
  CCTACCTGTA TGGCCACGGC GAAGACAGCC ACACTGCGAA GGATGTTCCA AGGCTCAGGT
  GACAGGGTCG CACGTATCTG TGGGAGCTTC ATGGGCACAC ATGCCACAGT CAGGTGGGTG
  GCAACGGGAC ACCTGCCTCT TCCACTCTCT AGACCTCTCC TCCTGTCCCC GCTGCTCAGC
  AGGCAGAGGA TGTCATGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384899834	MGP_WTSI_11_118278882	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250027699					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384899834	MGP_WTSI_11_118278882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:118308394 () rs orientation: forward

Symbol	Name	Function Class
Cant1	calcium activated nucleotidase 1	within coordinates
Cpgi4233	CpG island 4233	993 bp proximal
Gm72450	predicted gene, 72450	1519 bp upstream
Rr403174	regulatory region 403174	1307 bp upstream
Rr461043	regulatory region 461043	1785 bp distal
Rr461044	regulatory region 461044	1284 bp distal
Rr461045	regulatory region 461045	364 bp proximal
Rr461046	regulatory region 461046	1445 bp proximal
Rr461047	regulatory region 461047	1530 bp proximal
Tssr106139	transcription start site region 106139	1655 bp upstream
Tssr112167	transcription start site region 112167	1744 bp upstream
Tssr112168	transcription start site region 112168	1727 bp upstream
Tssr112169	transcription start site region 112169	1388 bp downstream
Tssr112170	transcription start site region 112170	1450 bp downstream
Tssr112171	transcription start site region 112171	1548 bp downstream