rs250036648 SNP Detail

Summary

• ID
  rs250036648
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCACAAGC ATGCACCCCC
  ACATAAATAC AACGCTTTTT TTTGTGTTAA ACATAGCTGA AATTTAAAAG TTTTGCATTG
  GTGGATCTGA GATTATAGTT CATGGAAGAA CACTTGCTTA GCTCCTGTGT GTGAAACCAG
  GCATTGTATC CGCAACACTG AAAATAAAAA TCATGTTAAA AGACGTATAC TTACATGTGG
  M
  ACATTCCAAT GTGGAAAACT GTTTCATAAA CACAGAAAGA GAGGCTGAGA TGGCTCAGCA
  GTTAAGAGCA CTGTTCTTCC TAAGGGCCCA AGTTTGGTTC TCAGCACCCA CATTGACTGG
  CTAACAACTA CCTGTAATCC AGCTCCAGGG GATCTGATGC TCTCCCCTGT CTCCCCAGGC
  ATCCCCACAC TTGTGATATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384371691	MGP_WTSI_11_96405885	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250036648					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384371691	MGP_WTSI_11_96405885	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435397 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1804 bp proximal
Rr252638	regulatory region 252638	798 bp distal
Rr252639	regulatory region 252639	1205 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	148 bp upstream
Tssr104544	transcription start site region 104544	802 bp upstream
Tssr104545	transcription start site region 104545	855 bp upstream
Tssr104546	transcription start site region 104546	863 bp upstream
Tssr104547	transcription start site region 104547	905 bp upstream
Tssr104548	transcription start site region 104548	999 bp upstream
Tssr104549	transcription start site region 104549	1012 bp upstream
Tssr104550	transcription start site region 104550	1070 bp upstream
Tssr104551	transcription start site region 104551	1098 bp upstream
Tssr104552	transcription start site region 104552	1119 bp upstream