rs250039565 SNP Detail

Summary

• ID
  rs250039565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32304906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGCAAG TTTGAATGTG
  TCTTGAGACG GGTGAGTGGA GGCTCACTCT CAGGTTTGTC TCCTGGGCTA GATTCTCATA
  CCTCACTGTG GCCCATTGAT GCCTTGGGAG AGTTGCCCTT CTCCAAGACC TTGGCCATTT
  TGAACACCAG GCCAGCCATC CTCTCTGTTG ACCAGATGGG AGCCAGCTTT TCTTAGCTAC
  Y
  GCAGCTGTCC TAGCTCCCAG CTCCTCCAGG GGCCCCCCTG ACTCACCTCT CAGGAGCTGG
  GCTGCGGTGG GAGGGTGAGA GAAGCAGGCA GGGGAGATGC TGTAATTGGT CTCCAGAAGT
  TCCAGAAGCT CTGCTGTGTA CCTGGAGAGA CACGGGTCTG CTCAGAAGCA GGCAGCGGGG
  GAAGGGCTGT GGCAGACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395859325	MGP_WTSI_16_32486174	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250039565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395859325	MGP_WTSI_16_32486174	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32304906 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1971 bp upstream
Rr514710	regulatory region 514710	535 bp distal
Rr514711	regulatory region 514711	1044 bp proximal
Rr514712	regulatory region 514712	1781 bp proximal
Rr514713	regulatory region 514713	1982 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1508 bp downstream
Tssr4847	transcription start site region 4847	1527 bp downstream
Tssr140806	transcription start site region 140806	80 bp downstream
Tssr140807	transcription start site region 140807	1064 bp downstream
Tssr140808	transcription start site region 140808	1080 bp downstream
Tssr140809	transcription start site region 140809	1107 bp downstream
Tssr140810	transcription start site region 140810	1137 bp downstream
Tssr140811	transcription start site region 140811	1555 bp downstream
Tssr140812	transcription start site region 140812	1579 bp downstream
Tssr140813	transcription start site region 140813	1721 bp downstream
Tssr140814	transcription start site region 140814	1785 bp downstream
Tssr140815	transcription start site region 140815	1809 bp downstream