rs250047826 SNP Detail

Summary

• ID
  rs250047826
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37402282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTAGTGT CTGCTCAGAG
  TTTCTCCCAG TTTTCATTGA AAACATTACA TTGTGTTTAC CTAGTGTTCA CTTCTCATAG
  TGAAGGCTAC TTTTTCTGGG GACGAAAAAG AGTCACAACT GAGAATATCA CATTAGCAAA
  CAACCATAAA ACTCAGTAAG AATAGTTGTT TAAGTAAGGG TAATCACACT GAATGGGGGG
  K
  GGGGGGGATT GTGCCATAGT TCATGAGGCC TTGGCTCCAC AGATGTTCAT TTGGAGACGT
  TGTTACTTAG AAAATTTGTT CCAGAAACAG CGGTTTCATT GTTAACTGTT AGATTAATTT
  TACACCCATT AGAAAGCAAA GTTAGATTAT TTGATTATGT TCATTTGAGG ATTCTTATTG
  AGCTCCTTTG TTAAACAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss377242067	MGP_WTSI_9_37298571	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs250047826					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377242067	MGP_WTSI_9_37298571	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37402282 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	1888 bp upstream
Cpgi21578	CpG island 21578	672 bp distal
Gm69832	predicted gene, 69832	1728 bp upstream
Msantd2	Myb/SANT-like DNA-binding domain containing 2	within coordinates
Rr676695	regulatory region 676695	1955 bp distal
Rr676696	regulatory region 676696	1655 bp distal
Rr676697	regulatory region 676697	1358 bp distal
Tssr2827	transcription start site region 2827	1907 bp downstream
Tssr84393	transcription start site region 84393	1987 bp downstream
Tssr84394	transcription start site region 84394	1936 bp downstream
Tssr84395	transcription start site region 84395	1660 bp downstream
Tssr88840	transcription start site region 88840	1133 bp upstream