rs250053333 SNP Detail

Summary

• ID
  rs250053333
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:78700323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGGGGAA CGTCGATGGC
  ACCGGGAGCT TTGCAGAAGG TGCAGTTTGG AGCCTGCCCT TCCCCGGGTG GCAGCTCGGG
  CTCGGCCCGG TGAATCCTCG CCGCCGGCCG TGGGGACGGC TGTGGGGCGG CTGCCAGTTG
  ATTTTTTTTT TTTTTTTAAA TTCGAGTGCT GTGTTCAAAG GCTTTCGGTG CGCACGGGAG
  R
  ACCCCGTCAC CGTAAATAAG CATATGGGCG ACTAACGGGG TATGTTTTTC CTCTGGGAAG
  GAGGATTTGA TCGCTCAGAC CGGTGTCAGC CTGTAAATAT TTAGACGGTA TTAGTGACTT
  CTGAACATTC TCGGCGAGAT CTGTTATTTA CAGTTGTCAT ATGTTATTAA TGCCCGTTGC
  CCAAGTTCCC TGGCAAATCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354575695	MGP_WTSI_2_78710136	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250053333					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354575695	MGP_WTSI_2_78710136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:78700323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11839	CpG island 11839			24 bp distal
Rr559887	regulatory region 559887			922 bp distal
Rr559888	regulatory region 559888			1047 bp distal
Rr559889	regulatory region 559889			291 bp distal
Rr559890	regulatory region 559890			764 bp distal
Tssr18521	transcription start site region 18521			1223 bp downstream
Tssr18522	transcription start site region 18522			1171 bp downstream
Tssr18523	transcription start site region 18523			870 bp downstream
Tssr18524	transcription start site region 18524			837 bp downstream
Tssr18525	transcription start site region 18525			816 bp downstream
Tssr18526	transcription start site region 18526			717 bp downstream
Tssr18527	transcription start site region 18527			658 bp downstream
Tssr18528	transcription start site region 18528			603 bp downstream
Tssr18529	transcription start site region 18529			468 bp downstream
Ube2e3	ubiquitin-conjugating enzyme E2E 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant