rs250053549 SNP Detail

Summary

• ID
  rs250053549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166083069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCAAAGAG ACAGTGGAGA
  AGACAGAATA AGGTGTCGAA GGGTCATGAT GATAGGATCG GGTCAGTCGC AGGCAGAAGA
  GAGCAAATGG CTGCAAGAAG AAAAAAGTTT GTTTCCTCTG GGGCATCCAC CAGCTCCAGG
  AGGGTGCGGT AGGGTGGGGT GAGATCAAGA GACTAGGAAA ATGGGATCCA GCTTAAAATA
  R
  CCAAAGCAAA TCTGAAACGA GAGAAAAGAC ATGCAAGAAG GAAGAAAGAC AAATACCCCC
  TCTTCTTTTA CTCTCAGAAT GAAATTATCA ATTGCCTGAG TTCTTTCCCC ATGGCAAATG
  ATAGGCCCTA ACACTGCTCT TGCCCCCAGC TGGGATGAGG TGGGGGTGGG GGTGGGGTGG
  CATCCTCAGT AGAGTTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352259888	MGP_WTSI_1_168185631	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250053549					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352259888	MGP_WTSI_1_168185631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166083069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	518 bp distal
Ildr2	immunoglobulin-like domain containing receptor 2	within coordinates
Rr422555	regulatory region 422555	1297 bp distal
Rr422556	regulatory region 422556	1367 bp distal
Rr422557	regulatory region 422557	71 bp distal
Rr422558	regulatory region 422558	94 bp proximal
Tssr9868	transcription start site region 9868	1410 bp downstream
Tssr9869	transcription start site region 9869	1344 bp downstream
Tssr9870	transcription start site region 9870	1330 bp downstream
Tssr9871	transcription start site region 9871	1251 bp downstream
Tssr9872	transcription start site region 9872	1093 bp upstream