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rs250060214 SNP Detail
Summary
  • ID
    rs250060214
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:94841689 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTGGCTGC CTACTCCTCC
TGACTGCTTT GCCTTGCCCA CTTCAGGAGA GTACTGGATC GACCCTAACC AAGGCTGCAA
CCTGGACGCC ATCAAGGTCT ACTGCAACAT GGAGACAGGT CAGACCTGTG TGTTCCCTAC
TCAGCCGTCT GTGCCTCAGA AGAACTGGTA CATCAGCCCG AACCCCAAGG AAAAGAAGCA
Y
GTCTGGTTTG GAGAGAGCAT GACCGATGGA TTCCCGGTAC GTGAGCTGAA CCCCAGAGCA
ACTCTACAGG AGATGGGTTA GCCTCTTATC CAGAAAGCAC AGGAAGTCCT GGAGTGGATT
TAATCTGCTT AGTGGAAGGG CAGATACAGA TCTAGGATAC AGGAGTTCTG GGTAGGAAAG
CCAGGGACGA GAAGGTCCAC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336262 MGP_WTSI_11_94812177 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250060214 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336262 MGP_WTSI_11_94812177 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94841689 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
Rr454892 regulatory region 454892 1193 bp proximal
Tssr3647 transcription start site region 3647 1118 bp upstream
Tssr104261 transcription start site region 104261 1429 bp downstream
Tssr104262 transcription start site region 104262 689 bp downstream
Tssr104263 transcription start site region 104263 556 bp downstream
Tssr104264 transcription start site region 104264 534 bp downstream
Tssr104265 transcription start site region 104265 508 bp downstream
Tssr104266 transcription start site region 104266 496 bp downstream
Tssr104267 transcription start site region 104267 429 bp downstream
Tssr104268 transcription start site region 104268 401 bp downstream
Tssr104269 transcription start site region 104269 388 bp downstream
Tssr104270 transcription start site region 104270 367 bp downstream
Tssr104271 transcription start site region 104271 313 bp downstream
Tssr104272 transcription start site region 104272 119 bp downstream
Tssr104273 transcription start site region 104273 25 bp downstream
Tssr104274 transcription start site region 104274 7 bp downstream
Tssr104275 transcription start site region 104275 within coordinates
Tssr104276 transcription start site region 104276 8 bp upstream
Tssr104277 transcription start site region 104277 242 bp upstream
Tssr104278 transcription start site region 104278 294 bp upstream
Tssr104279 transcription start site region 104279 311 bp upstream
Tssr104280 transcription start site region 104280 366 bp upstream
Tssr104281 transcription start site region 104281 380 bp upstream
Tssr104282 transcription start site region 104282 426 bp upstream
Tssr104283 transcription start site region 104283 598 bp upstream
Tssr104284 transcription start site region 104284 623 bp upstream
Tssr104285 transcription start site region 104285 692 bp upstream
Tssr104286 transcription start site region 104286 714 bp upstream
Tssr104287 transcription start site region 104287 741 bp upstream
Tssr104288 transcription start site region 104288 763 bp upstream
Tssr104289 transcription start site region 104289 804 bp upstream
Tssr104290 transcription start site region 104290 850 bp upstream
Tssr104291 transcription start site region 104291 859 bp upstream
Tssr104292 transcription start site region 104292 897 bp upstream
Tssr104293 transcription start site region 104293 1045 bp upstream
Tssr104294 transcription start site region 104294 1082 bp upstream
Tssr104295 transcription start site region 104295 1140 bp upstream
Tssr104296 transcription start site region 104296 1159 bp upstream
Tssr104297 transcription start site region 104297 1192 bp upstream
Tssr104298 transcription start site region 104298 1230 bp upstream
Tssr104299 transcription start site region 104299 1258 bp upstream
Tssr104300 transcription start site region 104300 1278 bp upstream
Tssr104301 transcription start site region 104301 1402 bp upstream
Tssr104302 transcription start site region 104302 1414 bp upstream
Tssr104303 transcription start site region 104303 1428 bp upstream
Tssr104304 transcription start site region 104304 1467 bp upstream
Tssr104305 transcription start site region 104305 1492 bp upstream
Tssr104306 transcription start site region 104306 1507 bp upstream
Tssr104307 transcription start site region 104307 1523 bp upstream
Tssr104308 transcription start site region 104308 1593 bp upstream
Tssr104309 transcription start site region 104309 1613 bp upstream
Tssr104310 transcription start site region 104310 1658 bp upstream
Tssr104311 transcription start site region 104311 1754 bp upstream
Tssr104312 transcription start site region 104312 1824 bp upstream
Tssr104313 transcription start site region 104313 1840 bp upstream
Tssr110222 transcription start site region 110222 within coordinates
Tssr110223 transcription start site region 110223 348 bp downstream
Tssr110224 transcription start site region 110224 433 bp downstream
Tssr110225 transcription start site region 110225 646 bp downstream
Tssr110226 transcription start site region 110226 679 bp downstream
Tssr110227 transcription start site region 110227 718 bp downstream
Tssr110228 transcription start site region 110228 730 bp downstream
Tssr110229 transcription start site region 110229 790 bp downstream
Tssr110230 transcription start site region 110230 821 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory