rs250074578 SNP Detail

Summary

• ID
  rs250074578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATGGGGG GGTGTCGAGA
  AGGAACCCAT TGAATTTTGT TAGTGTTGTT TATAGGAGCA CGGGCAAGGG CTTCTTTACA
  GCATTGTAGG CACTGTACTA GTGACTGCAC CCCTAAAGTA AATGTCTCTC CCTACCTCAC
  CAACTATTAA TTGTGTATAA ATCTTCAGGG TGGGGTGGTA CCTCATAAGC CCCTCCTCTT
  Y
  CCATGATAGA GTGTTAATGG GCCCACTCTT GTGGAGATCT TGTGCAGGTG ATCCAGCTGT
  TGTTAACTCA ATAGCCAAGT CATGACTGGA AATCATCATT CCATACCTCA CCCCCCTTCT
  TCTGGTTCTT AAATTCTTCC TACCCCTTCT TCCATGATGT TTCCTGAGCC TTGGAAGTAT
  TGGTATATAT GTGTCCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377243240	MGP_WTSI_9_37361375	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250074578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377243240	MGP_WTSI_9_37361375	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	901 bp distal
Gm46107	predicted gene, 46107	1654 bp upstream
Nrgn	neurogranin	1045 bp upstream
Rr676716	regulatory region 676716	897 bp distal
Rr676717	regulatory region 676717	441 bp distal
Rr676718	regulatory region 676718	398 bp proximal
Rr676719	regulatory region 676719	1367 bp proximal
Rr676720	regulatory region 676720	1630 bp proximal
Tssr84410	transcription start site region 84410	1824 bp upstream
Tssr84411	transcription start site region 84411	1847 bp upstream
Tssr84412	transcription start site region 84412	1855 bp upstream
Tssr84413	transcription start site region 84413	1881 bp upstream
Tssr84414	transcription start site region 84414	1903 bp upstream
Tssr88858	transcription start site region 88858	1079 bp upstream
Tssr88859	transcription start site region 88859	1049 bp upstream
Tssr88860	transcription start site region 88860	808 bp upstream
Tssr88861	transcription start site region 88861	393 bp upstream