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rs250084593 SNP Detail
Summary
  • ID
    rs250084593
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr5:122238116 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAAAAAGAA AAGAAAAGAA
    AGAAAAGAAA AGAAAGAAAA GAAAAGGAAG GAAGAAAAGA AAAGAAAAAT GGAGGAGTTA
    ACCCTATGTT TCCTTTTTTT TTATTCATCA TTGGTGAGGC TATCCTCAGC TACATATCAA
    GTTCAAGCCA GCCTGGGCTA CATGAGACCC TGCCTCAAAA AAGAAAAGGA GCCAGTGTAG
    Y
    GACATACTCC CGTCCTCCCA GCACTTGGGA GACAGAGGCT ACTCCACTGC TGTCTCCAGC
    AGCCGGCCTG CCTCCCTGAG CCTCATTTTT TTCATAACAT GGGGACCCAA CTGCTAAGGT
    GACCTTGCTC CCATGGGGTG ACTGGAGACT TGAGAGTGAA GTGGTTATCA TTTGTCCAGT
    CTGTGAACAA ATGGCAGCCT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366510570 MGP_WTSI_5_122550062 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250084593 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss366510570 MGP_WTSI_5_122550062 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:122238116 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm57283 predicted gene, 57283 1786 bp downstream
Myl2 myosin, light polypeptide 2, regulatory, cardiac, slow 898 bp upstream
Rr124298 regulatory region 124298 884 bp proximal
Rr407055 regulatory region 407055 665 bp proximal
Tssr48619 transcription start site region 48619 731 bp upstream
Tssr48620 transcription start site region 48620 763 bp upstream
Tssr48621 transcription start site region 48621 891 bp upstream
Tssr48622 transcription start site region 48622 919 bp upstream
Tssr48623 transcription start site region 48623 1093 bp upstream
Tssr48624 transcription start site region 48624 1110 bp upstream
Tssr48625 transcription start site region 48625 1724 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory