rs250084593 SNP Detail

Summary

• ID
  rs250084593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122238116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGAA AAGAAAAGAA
  AGAAAAGAAA AGAAAGAAAA GAAAAGGAAG GAAGAAAAGA AAAGAAAAAT GGAGGAGTTA
  ACCCTATGTT TCCTTTTTTT TTATTCATCA TTGGTGAGGC TATCCTCAGC TACATATCAA
  GTTCAAGCCA GCCTGGGCTA CATGAGACCC TGCCTCAAAA AAGAAAAGGA GCCAGTGTAG
  Y
  GACATACTCC CGTCCTCCCA GCACTTGGGA GACAGAGGCT ACTCCACTGC TGTCTCCAGC
  AGCCGGCCTG CCTCCCTGAG CCTCATTTTT TTCATAACAT GGGGACCCAA CTGCTAAGGT
  GACCTTGCTC CCATGGGGTG ACTGGAGACT TGAGAGTGAA GTGGTTATCA TTTGTCCAGT
  CTGTGAACAA ATGGCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366510570	MGP_WTSI_5_122550062	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250084593					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366510570	MGP_WTSI_5_122550062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122238116 () rs orientation: forward

Symbol	Name	Function Class
Gm57283	predicted gene, 57283	1786 bp downstream
Myl2	myosin, light polypeptide 2, regulatory, cardiac, slow	898 bp upstream
Rr124298	regulatory region 124298	884 bp proximal
Rr407055	regulatory region 407055	665 bp proximal
Tssr48619	transcription start site region 48619	731 bp upstream
Tssr48620	transcription start site region 48620	763 bp upstream
Tssr48621	transcription start site region 48621	891 bp upstream
Tssr48622	transcription start site region 48622	919 bp upstream
Tssr48623	transcription start site region 48623	1093 bp upstream
Tssr48624	transcription start site region 48624	1110 bp upstream
Tssr48625	transcription start site region 48625	1724 bp upstream