rs250086176 SNP Detail

Summary

• ID
  rs250086176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:30164359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATAACAT AGTCAATTGC
  TTGAGCATGG TGGAATATAT CCTTAACCCC AGCACTTGCG AGGCAAAGGC AGGTGGATCT
  CTGTTGAGTT TGAGGCCAGC CTGGTCTACA GCCTGGTTCT AGGCCAGCCT GGTCTACATA
  ATACAACCCT GTCCCTAAAC AAACAAACAA ACCCCCCCAC CCCACCCCCC ACCCCCCCAC
  W
  TGCCCGATGA TACATACCTG CAATGCCAGC ACTTGGGAGG AGAGACGGAG GGGAATCTGG
  AGTCTGAGCC ACTCTGGGCT ATAAGGCTAG ACCCCGCCAC AAAAATACAT ACATAAACTT
  AATGAACCTC TAAGAAACAT TGAACAAATA AATGGAACCC CCTGCAAAGG AGAACGGAGA
  AATGGGATAC TGACATAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ
ss367827974	MGP_WTSI_6_30114360	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	A	T	T	A	A	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ
rs250086176					SNP	T	A	T	A	T	T	A	A	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367827974	MGP_WTSI_6_30114360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:30164359 () rs orientation: forward

Symbol	Name	Function Class
Mir182	microRNA 182	1558 bp downstream
Mirc35	microRNA cluster 35, including Mir182 through Mir183	1558 bp proximal
Mirc35hg	microRNA cluster 35, host gene	within coordinates
Rr627708	regulatory region 627708	1842 bp distal