rs250090291 SNP Detail

Summary

• ID
  rs250090291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60713282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCACAAC ACACACATAA
  TCCTAATTCT TTTCACTTAA AAAAAAAAAA AAAACAGCAA AGGCTAGGGT ATTCGGTGCA
  TACTGGGCAA GTAAAACCTT AAAATTCACA GGATATCTGC CCTTGAAAGT GTTTAAAGAT
  TACAGCACAG CCAGGCTGTG AGCTAGTGGG GACCCCAGAA CTGTTTTTCT ACTACTACTC
  Y
  ATGCATTGGT TTTGTTTTTT TTTTTGGTTT TTTTTTTTTT TTTTTTTTTT TTTTTTGCTG
  TGACCTGTTG TCTTTCCTCA CTATGAGCCA GCACAAATGC AAAGTGGACA GTTTTAGTTC
  CAACTGTTCA AGTCGAAGAT GCCTTTTCCT GAGGACTCGA GACACACCCT ACTTCATCCT
  ACCCTCTGCA CTATTACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354169611	MGP_WTSI_2_60720995	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250090291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354169611	MGP_WTSI_2_60720995	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60713282 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11682	CpG island 11682			1044 bp distal
Gm50617	predicted gene, 50617			28 bp downstream
Gm74812	predicted gene, 74812			680 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr396988	regulatory region 396988			1941 bp downstream
Rr557731	regulatory region 557731			1947 bp distal
Rr557732	regulatory region 557732			978 bp distal
Rr557733	regulatory region 557733			363 bp distal
Rr557734	regulatory region 557734			905 bp proximal
Tssr24230	transcription start site region 24230			1732 bp upstream
Tssr24231	transcription start site region 24231			1652 bp upstream
Tssr24232	transcription start site region 24232			1622 bp upstream
Tssr24233	transcription start site region 24233			1584 bp upstream
Tssr24234	transcription start site region 24234			1447 bp upstream
Tssr24235	transcription start site region 24235			952 bp downstream