rs250093543 SNP Detail

Summary

• ID
  rs250093543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87005897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgtgggtt cctttacaca catggcaagg
  caaacataga cacacaaaca aacaaaTTTA AAAGAAAAAT TTTTGGTAAA GTATTTAATA
  TCtttatgtg tatgtgtgtg cttgcttgag actgtccttc acatgtgtgc aggagcttgt
  R
  gaagccagaa gagggtactg gatcttctga aactcagagt tggttttgag caatcatgtg
  gatgctgaga atggaacaaa cctagatgct ctgcaagact aagagctctc ttaaccactg
  aattctctct ccaaccccCA AATGAAAGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323772698	CHEV_11_86928573	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250093543					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87005897 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mir301	microRNA 301			1982 bp downstream
Ska2	spindle and kinetochore associated complex subunit 2			Intron
				Noncoding-Transcript-Variant
Tssr103909	transcription start site region 103909			1991 bp downstream