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rs250095711 SNP Detail
Summary
  • ID
    rs250095711
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127032 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCTTTCCTC TTCTTCATCT
CTTCTTCCTC CTTTTCACCT CCTTTCTCCA TCTTCCCTTG CTCCCTATTT TTTCTATCCT
TCCATTTTCT TCCTTCATCT CTTCCATCTT TTCTTCCTCT ATCTTTCTTC TCCTCCCCTT
CTATTTTTTC TCTTCTATTT TCTCCTCATC ATCGTCCTAT TTCATTTCCT CTTCCTCATC
Y
TTCATACCTT CCTCCTGTAT CTCCTGTTCA TCCTTCTACA TTTCCTCTTC GTATCTATTT
CCTCCTCCTC CTCAATCTCC TACCTATACT TCATCTCCTC TTTCTCTATC TCCTCCTACT
CTTCTACATC CCTTTACTTC TCCATCTCCT CCTCTGTTTT CTTCTCCATC TGCTCTCCCT
TTTCTTTCCA TCCATATCAT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156087 MGP_WTSI_7_51732978 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250095711 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156087 MGP_WTSI_7_51732978 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127032 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 1949 bp distal
Tssr2222 transcription start site region 2222 1254 bp downstream
Tssr2223 transcription start site region 2223 1075 bp downstream
Tssr2224 transcription start site region 2224 229 bp downstream
Tssr2225 transcription start site region 2225 189 bp downstream
Tssr2226 transcription start site region 2226 330 bp upstream
Tssr2227 transcription start site region 2227 1403 bp upstream
Tssr66193 transcription start site region 66193 1997 bp downstream
Tssr66194 transcription start site region 66194 1905 bp downstream
Tssr66195 transcription start site region 66195 1854 bp downstream
Tssr66196 transcription start site region 66196 1821 bp downstream
Tssr66197 transcription start site region 66197 1676 bp downstream
Tssr66198 transcription start site region 66198 1645 bp downstream
Tssr66199 transcription start site region 66199 1635 bp downstream
Tssr66200 transcription start site region 66200 1612 bp downstream
Tssr66201 transcription start site region 66201 1594 bp downstream
Tssr66202 transcription start site region 66202 1579 bp downstream
Tssr66203 transcription start site region 66203 1557 bp downstream
Tssr66204 transcription start site region 66204 1501 bp downstream
Tssr66205 transcription start site region 66205 1477 bp downstream
Tssr66206 transcription start site region 66206 1464 bp downstream
Tssr66207 transcription start site region 66207 1444 bp downstream
Tssr66208 transcription start site region 66208 1430 bp downstream
Tssr66209 transcription start site region 66209 1399 bp downstream
Tssr66210 transcription start site region 66210 1366 bp downstream
Tssr66211 transcription start site region 66211 1326 bp downstream
Tssr66212 transcription start site region 66212 1283 bp downstream
Tssr66213 transcription start site region 66213 1268 bp downstream
Tssr66214 transcription start site region 66214 1236 bp downstream
Tssr66215 transcription start site region 66215 1206 bp downstream
Tssr66216 transcription start site region 66216 1159 bp downstream
Tssr66217 transcription start site region 66217 1087 bp downstream
Tssr66218 transcription start site region 66218 1033 bp downstream
Tssr66219 transcription start site region 66219 991 bp downstream
Tssr66220 transcription start site region 66220 957 bp downstream
Tssr66221 transcription start site region 66221 938 bp downstream
Tssr66222 transcription start site region 66222 885 bp downstream
Tssr66223 transcription start site region 66223 818 bp downstream
Tssr66224 transcription start site region 66224 795 bp downstream
Tssr66225 transcription start site region 66225 775 bp downstream
Tssr66226 transcription start site region 66226 762 bp downstream
Tssr66227 transcription start site region 66227 721 bp downstream
Tssr66228 transcription start site region 66228 718 bp downstream
Tssr66229 transcription start site region 66229 705 bp downstream
Tssr66230 transcription start site region 66230 685 bp downstream
Tssr66231 transcription start site region 66231 650 bp downstream
Tssr66232 transcription start site region 66232 638 bp downstream
Tssr66233 transcription start site region 66233 616 bp downstream
Tssr66234 transcription start site region 66234 586 bp downstream
Tssr66235 transcription start site region 66235 566 bp downstream
Tssr66236 transcription start site region 66236 539 bp downstream
Tssr66237 transcription start site region 66237 518 bp downstream
Tssr66238 transcription start site region 66238 499 bp downstream
Tssr66239 transcription start site region 66239 448 bp downstream
Tssr66240 transcription start site region 66240 367 bp downstream
Tssr66241 transcription start site region 66241 355 bp downstream
Tssr66242 transcription start site region 66242 275 bp downstream
Tssr66243 transcription start site region 66243 261 bp downstream
Tssr66244 transcription start site region 66244 210 bp downstream
Tssr66245 transcription start site region 66245 148 bp downstream
Tssr66246 transcription start site region 66246 120 bp downstream
Tssr66247 transcription start site region 66247 73 bp downstream
Tssr66248 transcription start site region 66248 32 bp downstream
Tssr66249 transcription start site region 66249 9 bp downstream
Tssr66250 transcription start site region 66250 1 bp upstream
Tssr66251 transcription start site region 66251 11 bp upstream
Tssr66252 transcription start site region 66252 45 bp upstream
Tssr66253 transcription start site region 66253 68 bp upstream
Tssr66254 transcription start site region 66254 98 bp upstream
Tssr66255 transcription start site region 66255 158 bp upstream
Tssr66256 transcription start site region 66256 186 bp upstream
Tssr66257 transcription start site region 66257 222 bp upstream
Tssr66258 transcription start site region 66258 252 bp upstream
Tssr66259 transcription start site region 66259 281 bp upstream
Tssr66260 transcription start site region 66260 397 bp upstream
Tssr66261 transcription start site region 66261 423 bp upstream
Tssr66262 transcription start site region 66262 440 bp upstream
Tssr66263 transcription start site region 66263 446 bp upstream
Tssr66264 transcription start site region 66264 456 bp upstream
Tssr66265 transcription start site region 66265 485 bp upstream
Tssr66266 transcription start site region 66266 528 bp upstream
Tssr66267 transcription start site region 66267 556 bp upstream
Tssr66268 transcription start site region 66268 585 bp upstream
Tssr66269 transcription start site region 66269 605 bp upstream
Tssr66270 transcription start site region 66270 656 bp upstream
Tssr66271 transcription start site region 66271 674 bp upstream
Tssr66272 transcription start site region 66272 740 bp upstream
Tssr66273 transcription start site region 66273 752 bp upstream
Tssr66274 transcription start site region 66274 767 bp upstream
Tssr66275 transcription start site region 66275 775 bp upstream
Tssr66276 transcription start site region 66276 804 bp upstream
Tssr66277 transcription start site region 66277 812 bp upstream
Tssr66278 transcription start site region 66278 844 bp upstream
Tssr66279 transcription start site region 66279 891 bp upstream
Tssr66280 transcription start site region 66280 930 bp upstream
Tssr66281 transcription start site region 66281 961 bp upstream
Tssr66282 transcription start site region 66282 987 bp upstream
Tssr66283 transcription start site region 66283 1001 bp upstream
Tssr66284 transcription start site region 66284 1018 bp upstream
Tssr66285 transcription start site region 66285 1033 bp upstream
Tssr66286 transcription start site region 66286 1070 bp upstream
Tssr66287 transcription start site region 66287 1088 bp upstream
Tssr66288 transcription start site region 66288 1124 bp upstream
Tssr66289 transcription start site region 66289 1172 bp upstream
Tssr66290 transcription start site region 66290 1233 bp upstream
Tssr66291 transcription start site region 66291 1262 bp upstream
Tssr66292 transcription start site region 66292 1300 bp upstream
Tssr66293 transcription start site region 66293 1318 bp upstream
Tssr66294 transcription start site region 66294 1339 bp upstream
Tssr66295 transcription start site region 66295 1624 bp upstream
Tssr66296 transcription start site region 66296 1757 bp upstream
Tssr66297 transcription start site region 66297 1800 bp upstream
Tssr66298 transcription start site region 66298 1825 bp upstream
Tssr66299 transcription start site region 66299 1894 bp upstream
Tssr66300 transcription start site region 66300 1901 bp upstream
Tssr66301 transcription start site region 66301 1925 bp upstream
Tssr66302 transcription start site region 66302 1939 bp upstream
Tssr66303 transcription start site region 66303 1980 bp upstream
Tssr66304 transcription start site region 66304 1988 bp upstream
Tssr66305 transcription start site region 66305 1998 bp upstream
Tssr72198 transcription start site region 72198 1824 bp upstream
Tssr72199 transcription start site region 72199 125 bp upstream
Tssr72200 transcription start site region 72200 821 bp downstream
Tssr72201 transcription start site region 72201 1322 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory
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