rs250100172 SNP Detail

Summary

• ID
  rs250100172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:22039471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCGGGAA TTTCTTTCCA
  AAGAGCCATG CCATCAAATA TAGCCCGAGT TCTGGAGGTT ACTTGTAGAA TAAACCTCCT
  TAATTCTGTG ACCCGTGTTC GTAGCGAGAG TTGAATAGCT CAAGAGAAGA GGCCTGACCA
  TGTGCATAGG CAAACAGGTC TCAGGCTCGC TCTCCTCCTC TCCCGGGTCC TTCGCCACTA
  Y
  CCTCCGCTGG CCATCCCGAC AGTCCTGGGA GCCGGGACTT AATCGGGCTG CTGGACGGCA
  TGATGTAGAC CATCCAGACA GGACTGACCT ATGCGGGGAG AGGAGAGGGA AGGAACGCGA
  GAGGGAGGGG CGGCTGCCTG TGGAAACCGG TTCTTCCAGG GAAGCGGAGC GGGACTTCGG
  CGTTCCCCTC GATTTGCGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390501730	MGP_WTSI_14_22808625	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250100172					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390501730	MGP_WTSI_14_22808625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:22039471 () rs orientation: forward

Symbol	Name	Function Class
A330001L22Rik	RIKEN cDNA A330001L22 gene	218 bp upstream
Cpgi6226	CpG island 6226	830 bp distal
Cpgi6227	CpG island 6227	within coordinates
Cpgi6228	CpG island 6228	1209 bp proximal
Gm62264	predicted gene, 62264	466 bp upstream
Rr406381	regulatory region 406381	1456 bp proximal
Rr407248	regulatory region 407248	1813 bp proximal
Rr488634	regulatory region 488634	111 bp proximal
Rr488635	regulatory region 488635	188 bp proximal
Tssr124462	transcription start site region 124462	529 bp upstream
Tssr127699	transcription start site region 127699	1894 bp upstream
Tssr127700	transcription start site region 127700	1830 bp upstream
Tssr127701	transcription start site region 127701	1521 bp upstream
Tssr127702	transcription start site region 127702	1506 bp upstream
Tssr127703	transcription start site region 127703	1394 bp upstream
Tssr127704	transcription start site region 127704	967 bp upstream
Tssr127705	transcription start site region 127705	72 bp downstream
Zfp503	zinc finger protein 503	within coordinates