rs250105857 SNP Detail

Summary

• ID
  rs250105857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:117054996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGACAGTG GGAGCACCTG
  TCAGCATCTA GATTGGTGGC AGGTGCAATG GGGAGCGCGT ATAATTTTCT TGGTGTGACA
  AGTCTGACAA AGAAGACTTA AGGCAGGAAG GGTTCACTTG GGCTCATAGT TTGAGGGGCT
  CACAGTTTGA GGGGCTCACA GTTTGAGGGG CTCACAGTTT GAGGTGCAGT CTGTGATGGT
  R
  AGGAGCCACA GCCAGTGAGG CAGCTGGTCA TGCTTGCATC TGCATCCAGT CAGGAAGCAG
  AAAGACAAGC TCGCTGGTGT GCAATCTGCT TTCTCCTTTT TCAGCGTTCT AGGGCCCGCC
  CATGGGATGG TACCATGTTT GTTCAGGGCC AGTCTTCCCA CCTCAGCTAA CATACCAGAA
  AATTCTTTGA AGACATAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SM/J	ST/bJ	SWR/J
ss384869732	MGP_WTSI_11_117025484	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	PWK/PhJ	SEA/GnJ	SM/J	ST/bJ	SWR/J
rs250105857					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384869732	MGP_WTSI_11_117025484	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:117054996 () rs orientation: forward

Symbol	Name	Function Class
Tssr112020	transcription start site region 112020	1547 bp downstream