rs250112546 SNP Detail

Summary

• ID
  rs250112546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58766753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAGTACC TTAAGTACAA
  GAGCCTCCTA GCTGTTTCTT TCTCCTGATG CTGGAGTCCT TGGAAGGAGG ACTGAGTTTT
  CTGAGCAACA AAGAGACCTT GCTTCTCTAA ATTGCTTCCT CTTCTTCCAG GCCATTAGTC
  CAGTTGGTTG TGTAGTATGT ATTTAGAGAC AGTGTCTGTC ATCAAAACTA CTGAAAAGAG
  Y
  GGAAGGCAGC ACGGGCTTTG GAATGTATTG AGAATTATTG TTGGAAGGTC TGTGTTAAAC
  CTCAGACATA CCAGTTATAG CCCACACAGG CTGAGCCAGT TAACTAGCCT TACAAAAGAA
  AGAATATATA GCTCAACTAG CTACACTGGG TGACAAAGAC GGGCAATCCC AGCTTCTCTG
  GAGACCGAGG CAGGAAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349771948	MGP_WTSI_1_58784438	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250112546					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349771948	MGP_WTSI_1_58784438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58766753 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cflar	CASP8 and FADD-like apoptosis regulator			Intron
				Noncoding-Transcript-Variant
Rr411489	regulatory region 411489			1323 bp distal
Rr411490	regulatory region 411490			138 bp distal
Rr411491	regulatory region 411491			673 bp proximal
Tssr6800	transcription start site region 6800			1531 bp downstream
Tssr6801	transcription start site region 6801			1519 bp downstream
Tssr6802	transcription start site region 6802			1488 bp downstream
Tssr6803	transcription start site region 6803			1416 bp downstream
Tssr6804	transcription start site region 6804			1372 bp downstream
Tssr6805	transcription start site region 6805			333 bp downstream
Tssr6806	transcription start site region 6806			1021 bp upstream
Tssr6807	transcription start site region 6807			1058 bp upstream
Tssr6808	transcription start site region 6808			1119 bp upstream
Tssr6809	transcription start site region 6809			1963 bp upstream
Tssr11790	transcription start site region 11790			1696 bp upstream
Tssr11791	transcription start site region 11791			482 bp upstream