rs250117321 SNP Detail

Summary

• ID
  rs250117321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126048844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGCAAA AACCAAAACA
  AAGAAAAAAT AGAAAAAGAA AAGCTACATA TTAACACAGT GGCTTGTGTC TCCTAGCAGA
  GCCCTTGTTG GCCAGTCACT CTGAGCACAC CCTGTTACCT GGCAGGCCAT AATCTCCTAT
  AAATGCAGGC AGTGAGCTTT GGGGGTTATT CAGAGTCCAC AGCAAGAAGT GCATCAGTTG
  Y
  CTCAGACACT GCACCGGGTG ACAGTGATTC CCACAGAGCA CGGTTAATGC AGACTGTGGC
  TGCAGGTGCG GCTGGGACGG AGCACACCTG CCTGCCCTGG GTTCCAGCCC CAGCACCACA
  CTGGGCAGCA CTGGACTAAA CGACCCTGTC TTCTTTTCTT GGCTTTTGTT TTCGTTTCTG
  AAACGGAGCC TTGCTTTCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068795	MGP_WTSI_7_133593186	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250117321					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068795	MGP_WTSI_7_133593186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126048844 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Tssr69023	transcription start site region 69023	1758 bp downstream
Tssr74674	transcription start site region 74674	1993 bp upstream
Tssr74675	transcription start site region 74675	1979 bp upstream
Tssr74676	transcription start site region 74676	1770 bp upstream
Tssr74677	transcription start site region 74677	1727 bp upstream
Tssr74678	transcription start site region 74678	1706 bp upstream
Tssr74679	transcription start site region 74679	1686 bp upstream
Tssr74680	transcription start site region 74680	1668 bp upstream
Tssr74681	transcription start site region 74681	1642 bp upstream
Tssr74682	transcription start site region 74682	1631 bp upstream
Tssr74683	transcription start site region 74683	1428 bp upstream
Tssr74684	transcription start site region 74684	1326 bp upstream
Tssr74685	transcription start site region 74685	1290 bp upstream
Tssr74686	transcription start site region 74686	1034 bp upstream
Tssr74687	transcription start site region 74687	998 bp upstream
Tssr74688	transcription start site region 74688	913 bp upstream
Tssr74689	transcription start site region 74689	842 bp upstream
Tssr74690	transcription start site region 74690	426 bp upstream
Tssr74691	transcription start site region 74691	366 bp upstream
Tssr74692	transcription start site region 74692	480 bp downstream
Tssr74693	transcription start site region 74693	506 bp downstream
Tssr74694	transcription start site region 74694	629 bp downstream
Tssr74695	transcription start site region 74695	830 bp downstream