rs250122670 SNP Detail

Summary

• ID
  rs250122670
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8972358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAACGAG GCCCGCGAGG
  TTCCGGATGG TGTCCATGAC TTTCAAACGG AGCCGCAGCG ACCGGTTCTA CAGCACCCGG
  TGCTGCGGCT GTTGCCATGT CCGCACCGGG ACGATCATCC TGGGGACCTG GTACATGGTA
  AGGGCTGGCT GGCAGGGCCG CTCCACCAGG CCAGTGCGCC TGCGCGACAA GTGGGCCTGG
  K
  GGGCAGGGGG CGGGGACGTG AAAGTTGTTG GGGCGCTACT TTTCGGGGTG CTTTTAACTG
  TGAACTGAGG CTTTACGAGA TGGGGCTCCC CAGGATTTGG GAGGGGATGG GAATAGGATC
  GTCATTTCGG GTTCGGGAAG TGCGCAACCC TCATCCCGCC CCACCCCCCC ATCGAAACAA
  TTATTGTCCC GCAGTTATGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323886815	CHEV_12_8929164	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250122670					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8972358 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	within coordinates
Gm60663	predicted gene, 60663	499 bp upstream
Laptm4a	lysosomal-associated protein transmembrane 4A	within coordinates
Rr403227	regulatory region 403227	252 bp downstream
Rr462715	regulatory region 462715	750 bp distal
Rr462716	regulatory region 462716	510 bp distal
Rr462717	regulatory region 462717	591 bp distal
Rr462718	regulatory region 462718	9 bp distal
Rr462719	regulatory region 462719	245 bp proximal
Rr462720	regulatory region 462720	992 bp proximal
Tssr112751	transcription start site region 112751	687 bp downstream
Tssr112752	transcription start site region 112752	654 bp downstream
Tssr112753	transcription start site region 112753	648 bp downstream
Tssr112754	transcription start site region 112754	330 bp downstream
Tssr112755	transcription start site region 112755	304 bp downstream
Tssr112756	transcription start site region 112756	241 bp downstream
Tssr115725	transcription start site region 115725	485 bp upstream