rs250132936 SNP Detail

Summary

• ID
  rs250132936
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72759568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCAGAA AGTCTCTCCC
  GAAGCCAAAA AAGGGACCTC CCTGCATCCC TAGCAAGCCA CAACGCCCAA GTCCACAGCG
  CCAGGTGGCT TTCGAGGAGC TGGGCCTACC TGGGCAGCTC TTCTGGGGGG GGGTGGGGAG
  GACTGGCCCC TGTCCTCGCG TCCCCTAGAG TCCCGCTCCA CCTACCTCCA CAACATCCCT
  M
  TGCCTGATCC TGCCCTAAAC TCCGAAGTCG GCCCGGATCC CTACACTTCC CAGAACCCAC
  AGTATTTCTG GGATGCTCGC CTTCCTCCCT CATGAAGGGA CTGGGGGGGA ACCTCGTTGG
  TCCGAAAGTC AGCCATGCAT GCGGACCCAG CTTACCGAGC TTCAGCCTAC TCGCACGCCC
  CACCGCAACT ACCAAACTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403774838	MGP_WTSI_X_70961301	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250132936					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403774838	MGP_WTSI_X_70961301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72759568 () rs orientation: forward

Symbol	Name	Function Class
Abcd1	ATP-binding cassette, sub-family D member 1	635 bp upstream
Bcap31	B cell receptor associated protein 31	within coordinates
Cpgi22777	CpG island 22777	119 bp proximal
Cpgi22778	CpG island 22778	1097 bp proximal
Gm61833	predicted gene, 61833	1650 bp downstream
Rr406105	regulatory region 406105	439 bp upstream
Rr691928	regulatory region 691928	within coordinates
Rr691929	regulatory region 691929	267 bp distal
Rr691930	regulatory region 691930	25 bp distal
Rr691931	regulatory region 691931	203 bp proximal
Tssr161281	transcription start site region 161281	615 bp upstream
Tssr161282	transcription start site region 161282	750 bp upstream
Tssr161283	transcription start site region 161283	791 bp upstream
Tssr161284	transcription start site region 161284	824 bp upstream
Tssr161285	transcription start site region 161285	977 bp upstream
Tssr163562	transcription start site region 163562	183 bp downstream
Tssr163563	transcription start site region 163563	236 bp downstream
Tssr163564	transcription start site region 163564	480 bp downstream
Tssr163565	transcription start site region 163565	1868 bp downstream
Tssr163566	transcription start site region 163566	1888 bp downstream