rs250142216 SNP Detail

Summary

• ID
  rs250142216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102209097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGGGGGGC AGCTGGGAGG
  AGGGGCGGGC GCTGGGGGGA CCCGGGCGGC CGAGGCGGAG GCAAGGAAGG AGGGGAGGGG
  GGTGGTGGTA GTGGCGGCGG CGGCTGCTGC TGTTGCTGCC GCCGGGGAAG GGGGGGGCCG
  GGACAGGGAA GACACGCAGC CGCCCGGATG GCGGCGGGGC TGCGAGCCGA GGCGGGCGAG
  Y
  AAGCGGGCGG CTAAAGCGAC CTCGCCAGCC CCGCGGGGGA ACTAGCAGGC TTGGCCGGCG
  CGGGAGGAAG GGAGGGCCGA GGTGCGGCGG TGGAGAGGGT GGCCGGCGAG CCTCGCGGGT
  GCCGGCAACC CTGCTCTGGA GCTCTCTTCC AGGCTCTCCC AGCTTAAGCT CGGTTTCCCG
  GCCTAGTCCT CATCTGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384500224	MGP_WTSI_11_102179585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250142216					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384500224	MGP_WTSI_11_102179585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102209097 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	1488 bp downstream
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr105213	transcription start site region 105213	1412 bp downstream
Tssr105214	transcription start site region 105214	1302 bp downstream
Tssr105215	transcription start site region 105215	1256 bp downstream
Tssr111024	transcription start site region 111024	1625 bp upstream
Tssr111025	transcription start site region 111025	1593 bp upstream
Tssr111026	transcription start site region 111026	1563 bp upstream
Tssr111027	transcription start site region 111027	629 bp upstream
Tssr111028	transcription start site region 111028	486 bp upstream
Tssr111029	transcription start site region 111029	455 bp upstream
Tssr111030	transcription start site region 111030	394 bp upstream
Tssr111031	transcription start site region 111031	210 bp upstream
Tssr111032	transcription start site region 111032	670 bp downstream
Tssr111033	transcription start site region 111033	822 bp downstream
Tssr111034	transcription start site region 111034	1071 bp downstream
Tssr111035	transcription start site region 111035	1111 bp downstream
Tssr111036	transcription start site region 111036	1554 bp downstream
Tssr111037	transcription start site region 111037	1994 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates