rs250142609 SNP Detail

Summary

• ID
  rs250142609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121264617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGCGCG GGGCGCGCGG
  CCGACCTGAA GCCACACTCG CGGCTGCGCG CGCGCGCGCT GGGCTCAGCC GGCTCTGCTG
  CCGCGGAAGT GCGCGGGGAA GTGCGCGGGG GCGGCTCCGG GGCTCGGGGT TGTAGCAAAA
  CTTTGGATGG GGCGGGGGCG CCCAGGCAGG TGGTTGGATG GGGGGGGGGG TGCTTTACCT
  R
  GGGTGGCAGT CCAAGGGGCC TCCGAACCCC CCGCCCAGCC CTTCCCGCTC CGCCTGGATG
  CGCCTCCCCG CCCCCCGCGG CCGCGCTGAC GGCGAGTGGC CCGCCCGAGT GGAGCCGATT
  CAATTATATT GCAGCACCAG AGACACCTCG TCGCCCGCCG CCTCTCCGGC AGGCTAATTA
  AATTCCCTTC TTGGAGGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376272901	MGP_WTSI_8_123061778	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250142609					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376272901	MGP_WTSI_8_123061778	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121264617 () rs orientation: forward

Symbol	Name	Function Class
1700016A09Rik	RIKEN cDNA 1700016A09 gene	152 bp upstream
Cpgi21150	CpG island 21150	within coordinates
Gse1	genetic suppressor element 1, coiled-coil protein	within coordinates
Mir7687	microRNA 7687	818 bp upstream
Rr186097	regulatory region 186097	within coordinates
Rr368650	regulatory region 368650	1611 bp upstream
Rr401179	regulatory region 401179	368 bp downstream
Rr401180	regulatory region 401180	942 bp upstream
Tssr79771	transcription start site region 79771	1305 bp downstream
Tssr79772	transcription start site region 79772	485 bp downstream
Tssr79773	transcription start site region 79773	433 bp downstream
Tssr79774	transcription start site region 79774	407 bp downstream
Tssr79775	transcription start site region 79775	377 bp downstream
Tssr79776	transcription start site region 79776	366 bp downstream
Tssr83196	transcription start site region 83196	602 bp upstream
Tssr83197	transcription start site region 83197	299 bp upstream
Tssr83198	transcription start site region 83198	220 bp upstream
Tssr83199	transcription start site region 83199	186 bp upstream
Tssr83200	transcription start site region 83200	96 bp upstream
Tssr83201	transcription start site region 83201	769 bp downstream