rs250144060 SNP Detail

Summary

• ID
  rs250144060
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32521305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCTGGC CGCTTACATT
  GCTATACGCC ATACTAACAT GGCACACAAC ATCCTAACTC AATTTCTTGA TAATACTAAG
  TGAAAGTTTA CTTTAGAGAG TATGTGAATG CAGTTAACAT CTGGGCTTAA GAACCAGTCT
  GAAAACTTGG GAAAAGAGAA CCATCTGAAA GATCTCTAGC ATTAGAAAAG AGAGGTGACA
  K
  GGGGGGGGGT GCACAGTTCT ATGGTAGAGC ACCCCTGAGG AGTCCCTGAC TTGACGTTTT
  TATCCTCAAC CCTGGACCCT TTTCCTACCT CTTCTATCTT ACTAGTTGGT AAACGTTTAT
  TTATCGAAAG TACCTTAAAC AAGATGCAAT GATAACTGAA AGAATGATCA GTAGCTAGTA
  ACTGAAATAG TCTAATGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388186307	MGP_WTSI_13_32429191	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	FVB/NJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250144060					SNP	T	T	T	G	G	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388186307	MGP_WTSI_13_32429191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32521305 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	1497 bp upstream
Cpgi5422	CpG island 5422	626 bp proximal
Gmds	GDP-mannose 4, 6-dehydratase	within coordinates
Rr369665	regulatory region 369665	1489 bp upstream
Rr476844	regulatory region 476844	1405 bp proximal
Rr476845	regulatory region 476845	1408 bp proximal
Tssr121995	transcription start site region 121995	1178 bp downstream
Tssr121996	transcription start site region 121996	1232 bp downstream
Tssr121997	transcription start site region 121997	1243 bp downstream