rs250151382 SNP Detail

Summary

• ID
  rs250151382
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6161011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGAACC AAATAATAGA
  TCAGATGATC CAGCTACAGC CAGAAGTGCA ACAAAACAGG GAGCACGGAG CTGAAGGAGC
  ACAGAGCTGA TAAGGGGCAA GCATCAGAGT CTCAGGGTTG TGGCTGGGGA CAGTGGGCTG
  GTAGCCTGGA GATGGAAGCC AGGCTGCTGG ATGCTGTAGG AGGTGTGTGT GTGTGGGGGG
  R
  GGGGGGGGCT GGTTAATTCA TGTGCCCCTG GAACGTATGC TGTCTGGATT TGAACCTGGC
  TGTGCTGCCT ACTGGCTATG ACCTTGGGCA AGACATTTAA CTTAGTTAAT TCGTTGGCTC
  CGTTTCTTCA ACTGTGAAGT GGAAAGACAC TTCCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
ss401669316	MGP_WTSI_19_6110981	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ
rs250151382					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401669316	MGP_WTSI_19_6110981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6161011 () rs orientation: forward

Symbol	Name	Function Class
Naaladl1	N-acetylated alpha-linked acidic dipeptidase-like 1	within coordinates
Tssr154574	transcription start site region 154574	1905 bp upstream
Tssr154575	transcription start site region 154575	1925 bp upstream
Tssr154576	transcription start site region 154576	1943 bp upstream
Tssr154577	transcription start site region 154577	1959 bp upstream