rs250167938 SNP Detail

Summary

• ID
  rs250167938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74528343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCTGGTG CGTGGACCTG
  GGCCCGGCAG CTCTAATTGC AACGCTCCTG TTGATGATGA TTTTTTTTTT TTTAAATCAC
  AGCAGCCCCC AGTTTAGCGG ACTGATTTAC TCCGGGTATT GGTAAATATG ATCACGTGGG
  CCGCGCGACC AATGGTGGTG GCTGCAGCCT GCGAACTAGT CGGCGGCTCG GGCGCCGGCG
  W
  GGAGCCGCTC GGCGGTGGGC AGTGGAACCT TGGGTGGGAG CGAGCGGCGC CTCACCATGT
  CGTCCAGTGG CACCCTCAGC AACTACTACG TGGACTCGCT CATAGGCCAT GAGGGCGACG
  AGGTGTTCGC CGCGCGCTTT GGGCCACCGG GGCCGGGGAC ACAGGGCCGG CCCGCAGGTG
  TGGCCGATGG CCCAGCCGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354484956	MGP_WTSI_2_74536056	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250167938					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	T	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484956	MGP_WTSI_2_74536056	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74528343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11798	CpG island 11798	1061 bp distal
Cpgi11799	CpG island 11799	within coordinates
D2Mit35	DNA segment, Chr 2, Massachusetts Institute of Technology 35	1556 bp distal
D2Mit36	DNA segment, Chr 2, Massachusetts Institute of Technology 36	495 bp distal
D2Mit38	DNA segment, Chr 2, Massachusetts Institute of Technology 38	501 bp distal
D2Mit38.1	DNA segment, Chr 2, Massachusetts Institute of Technology 38.1	592 bp distal
D2Tfv10	DNA segment, Chr 2, Thomas F. Vogt 10	493 bp distal
D2Tfv11	DNA segment, Chr 2, Thomas F. Vogt 11	1670 bp proximal
Gm14396	predicted gene 14396	616 bp downstream
Gm28793	predicted gene 28793	413 bp upstream
Gm74919	predicted gene, 74919	815 bp upstream
Hoxd9	homeobox D9	mRNA-UTR
Igs15	intergenic site 15	within coordinates
Rr559357	regulatory region 559357	826 bp distal
Rr559358	regulatory region 559358	262 bp distal
Tssr18414	transcription start site region 18414	325 bp downstream
Tssr18415	transcription start site region 18415	248 bp downstream
Tssr18416	transcription start site region 18416	48 bp downstream
Tssr18417	transcription start site region 18417	17 bp downstream
Tssr18418	transcription start site region 18418	within coordinates
Tssr18419	transcription start site region 18419	15 bp upstream