rs250177553 SNP Detail

Summary

• ID
  rs250177553
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135980517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCCCTTG CCTCCTCGGG GGCAGATGGG
  GATGTCACCG GCTGGACTGG AAGGAATGAC AGCTGCCTGG CCGCAGGAGC CTGGGCTGGG
  CAGCAGGGGC TAATTTTACT CGCTGGGAGC AGAGAGAGTA ATCCTCCCGC CCCCACGCCC
  S
  ACCCGTCTGC CTGCCTCAGC AGGATAGGCT CAGTCAGGTC CAGTCCCCAA GGTGGGGGCA
  CTGGGGACAC AGGGAGGAGA GGGCAGTGGG CTGGGGGAAG AGAGGGGTGT CAGGGAAAGC
  CATGGAGCCG CCCTCACCCC AGGACGAGGG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319994513	CHEV_1_137949356	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250177553					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135980517 () rs orientation: forward

Symbol	Name	Function Class
Ascl5	achaete-scute family bHLH transcription factor 5	1409 bp downstream
Cacna1s	calcium channel, voltage-dependent, L type, alpha 1S subunit	mRNA-UTR
Cpgi803	CpG island 803	1016 bp distal
Rr419345	regulatory region 419345	1965 bp distal
Rr419346	regulatory region 419346	1531 bp distal
Tssr9037	transcription start site region 9037	18 bp downstream
Tssr9038	transcription start site region 9038	within coordinates
Tssr9039	transcription start site region 9039	25 bp upstream
Tssr9040	transcription start site region 9040	167 bp upstream