rs250179764 SNP Detail

Summary

• ID
  rs250179764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115518232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATCAAG TTAAGTGATA
  AAAACCAGTA AGTCACACAC ACCTAAAAAG CTTTAAAAGT GTTTGCCTTC AAGAAAACTA
  AAAAACACAA ACATTTTTAC AACCCAGGCG AGGAAAGTAT CACATTTGTT AACGTACCCT
  GGGTTCAGTC TCCAAAAACC AACACAGCAG TGTAGTCTGT AATTCCAGCA CTTGGGAGGT
  R
  GGAGGCATGA GGACCAAGAG TTCAAGGTCA CCCTTAAGAA CATAACAAGT TCGAGCCTAG
  CCAGGATTAT ACGGTCGCAA ACCAATAACA AAAATAAATA AAGGGAAATA TTAATCTCCT
  GTTTATTCAA AAATCTTCGT GCATTAACAG TCTTGCTATC TAAACAGATA AAAAATGATT
  TATAATATAA ATAAATATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323863455	CHEV_11_115488720	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250179764					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115518232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	307 bp proximal
Gm74427	predicted gene, 74427	1009 bp upstream
Rr369445	regulatory region 369445	196 bp upstream
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	998 bp upstream
Tssr111780	transcription start site region 111780	296 bp downstream
Tssr111781	transcription start site region 111781	321 bp downstream
Tssr111782	transcription start site region 111782	337 bp downstream
Tssr111783	transcription start site region 111783	355 bp downstream
Tssr111784	transcription start site region 111784	687 bp downstream
Tssr111785	transcription start site region 111785	719 bp downstream
Tssr111786	transcription start site region 111786	827 bp downstream
Tssr111787	transcription start site region 111787	854 bp downstream