rs250179889 SNP Detail

Summary

• ID
  rs250179889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144940779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC ACACACTGAA GGAGGGAGAT TCTGGACTGC CCATCCTTTA GGAATGTGTT
  ATAGGTCAGC ACTCAAATTG TTCCCTGCTC CCCCTCCTCT GATTGCAGAG CCCTAAGCTG
  GTCTAAGCTA GTACAGCCAT TGTTCACATC CACGGTGTGG GCTTCCGAGA TGACAGAACC
  Y
  GTCTCCTTCC CACAACACAA TGAGGAGGCC AGACTCAGAG CAGGAGATAG GGGCAAGCCT
  GGAGTCTACT TGGCTGGGTG TTTCCTCAGC ATCCACAGGC TACAAGTGGG AGACAGCCAG
  GTTCTCTGCA AGAGTGGCTG TAAAGGTGGG ATGGGAGGTG GGGTGGGGTG GCTCAGCCAG
  GGCTCAGTGT ACAAAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363595761	MGP_WTSI_4_144804112	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250179889					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363595761	MGP_WTSI_4_144804112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144940779 () rs orientation: forward

Symbol	Name	Function Class
Rr87265	regulatory region 87265	22 bp proximal
Rr103536	regulatory region 103536	980 bp distal
Rr103537	regulatory region 103537	within coordinates
Tnfrsf1b	tumor necrosis factor receptor superfamily, member 1b	within coordinates
Tssr40194	transcription start site region 40194	239 bp downstream
Tssr40195	transcription start site region 40195	72 bp upstream
Tssr44484	transcription start site region 44484	1424 bp upstream
Tssr44485	transcription start site region 44485	1358 bp upstream
Tssr44486	transcription start site region 44486	536 bp upstream
Tssr44487	transcription start site region 44487	481 bp upstream
Tssr44488	transcription start site region 44488	364 bp upstream
Tssr44489	transcription start site region 44489	288 bp upstream
Tssr44490	transcription start site region 44490	within coordinates
Tssr44491	transcription start site region 44491	156 bp downstream
Tssr44492	transcription start site region 44492	381 bp downstream
Tssr44493	transcription start site region 44493	542 bp downstream
Tssr44494	transcription start site region 44494	776 bp downstream
Tssr44495	transcription start site region 44495	837 bp downstream
Tssr44496	transcription start site region 44496	906 bp downstream
Tssr44497	transcription start site region 44497	1029 bp downstream
Tssr44498	transcription start site region 44498	1154 bp downstream
Tssr44499	transcription start site region 44499	1197 bp downstream
Tssr44500	transcription start site region 44500	1285 bp downstream
Tssr44501	transcription start site region 44501	1345 bp downstream
Tssr44502	transcription start site region 44502	1441 bp downstream
Tssr44503	transcription start site region 44503	1557 bp downstream
Tssr44504	transcription start site region 44504	1623 bp downstream