rs250184437 SNP Detail

Summary

• ID
  rs250184437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152101338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACAACTG TGGGCAAAAG
  CTAAGAGAAA AGACGCCCTG CCTTTAAAGA GACTTCATTC TTGGCGGGTA GTGCTGTTTA
  AAGGTACGGA AAATAAAAGC GGTGGAGAAG GTGTACTCTG GTGGGACTGC CGACGAGTCG
  CGGTGGAGCT GGGGAAGAGT CCTGCCCTAG GGAGGGAGGT GAGCAAAGGC TGGAGAGGTG
  R
  GCGCCTGCGT ACTGAGCGGG CGGCGGCTGG CGCGGCAGTC CGGGGCGTCG TGCGGAAAGC
  GCCGCGGGGC CAGGCAAGGT CGGGACGCGG GCGGGGAGCC TCTCCGGGAA GGTAGAGCGG
  ATCACAGCAC GCAGCGGGCT GGGCCGGTGA ATCCTCCCGC CCGCCGGCCG GCCGGGTCGG
  GATCGCTGCA GCGGCCGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028814	CHEV_3_152058665	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250184437					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152101338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	939 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm43857	predicted gene 43857	1461 bp upstream
Gm66519	predicted gene, 66519	1024 bp upstream
Rr587540	regulatory region 587540	1954 bp distal
Rr587541	regulatory region 587541	1867 bp distal
Rr587542	regulatory region 587542	218 bp distal
Rr587543	regulatory region 587543	within coordinates
Rr587544	regulatory region 587544	200 bp proximal
Rr587545	regulatory region 587545	260 bp proximal
Rr587546	regulatory region 587546	349 bp proximal
Rr587547	regulatory region 587547	493 bp proximal
Rr587548	regulatory region 587548	539 bp proximal
Rr587549	regulatory region 587549	574 bp proximal
Rr587550	regulatory region 587550	996 bp proximal
Rr587551	regulatory region 587551	1004 bp proximal
Rr587552	regulatory region 587552	1996 bp proximal
Tssr32410	transcription start site region 32410	212 bp downstream
Tssr32411	transcription start site region 32411	290 bp upstream
Tssr32412	transcription start site region 32412	360 bp upstream
Tssr32413	transcription start site region 32413	661 bp upstream
Tssr32414	transcription start site region 32414	963 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	Intron