rs250187952 SNP Detail

Summary

• ID
  rs250187952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156076564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTCCGCA GAAAGGACAT AGCCACCGCC
  CAACGCGTAG GGCAGGTAGT AGTCGCAGAG TTGCCAGGCT GCTTCTCGCC AGCGACCTCC
  CGGCTTGACG CGCCCGCGCC CGGAAAAGAA GCCCCAGTAG AGGCGCCGGC GGCGTGCGGG
  Y
  TCCCGTGCGC GTAGGTCCAC CAGGATAGCG TCCAGGCGCG CAAAGGAGTC GTCGTCCGCC
  TTGAGCACGA ACTCGAAGTC CACGCGCTCA TCCAGCCAGG TCAGCATGGC CAGGACCTTG
  GCCGTGAGGT TCTCGTAGGC GTCGCGCAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444385	CHEV_4_155366216	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250187952					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156076564 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	110 bp upstream
Rr606628	regulatory region 606628	1578 bp distal
Rr606629	regulatory region 606629	745 bp distal
Rr606630	regulatory region 606630	467 bp proximal
Rr606631	regulatory region 606631	532 bp proximal
Rr606632	regulatory region 606632	543 bp proximal
Rr606633	regulatory region 606633	785 bp proximal
Rr606634	regulatory region 606634	1146 bp proximal
Rr606635	regulatory region 606635	1281 bp proximal
Sdf4	stromal cell derived factor 4	765 bp upstream
Tssr1404	transcription start site region 1404	832 bp upstream
Tssr40748	transcription start site region 40748	293 bp upstream
Tssr40749	transcription start site region 40749	1036 bp upstream
Tssr40750	transcription start site region 40750	1123 bp upstream
Tssr40751	transcription start site region 40751	1198 bp upstream
Tssr40752	transcription start site region 40752	1341 bp upstream
Tssr44987	transcription start site region 44987	224 bp downstream
Tssr44988	transcription start site region 44988	497 bp downstream