rs250196668 SNP Detail

Summary

• ID
  rs250196668
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96140737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTGCTC TCCTGAGAAA
  ATGGAGAAAG GTACTTAACC CTGGATGTAA AAGACTAACC CAAAACGTTT AAGACTAACT
  GTGGGAAAGT GGGAGGGCGA AGAGCACAGC TAAGCTGCTC TTTGTTGATA TCAGAAACCA
  GCCTGTCATT CACTTTGGCG TTGAAGCATG GCCTATCTCA GGGGGCAGGA CCAGGACTCT
  Y
  CCCTCCCACA AGGGCTGGGC AGTTTCTGCA AGCTCAGAGA GCTCTGAGCA GTTTTTCAGG
  AGTTTCTCCT CCCCTTTTAC TGGGAAATTC ATGGTGCATT TGCTCTGCCT TCAAAATGCG
  GTAAGGTCTT CTGCTTTCTA ACTGACTGCC TTGGAGCCAG CAGATAGTCG GACATGTACA
  ATTCGAATTA TGCAGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107361	CHEV_9_96159103	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250196668					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96140737 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	536 bp upstream
Tssr86589	transcription start site region 86589	13 bp upstream
Tssr86590	transcription start site region 86590	30 bp upstream
Tssr86591	transcription start site region 86591	44 bp upstream
Tssr86592	transcription start site region 86592	107 bp upstream
Tssr86593	transcription start site region 86593	122 bp upstream
Tssr86594	transcription start site region 86594	324 bp upstream
Tssr86595	transcription start site region 86595	562 bp upstream
Tssr86596	transcription start site region 86596	586 bp upstream