rs250196779 SNP Detail

Summary

• ID
  rs250196779
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130547364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTACATGGT CTTTCCTGAC CATTTAGTTC
  TTAGAATTCT GGAACAGTCC ACAAGCCAGC TGCTCCGTGG TTGTCATCGT CATGGCCTGA
  GGGTGACTAA GTGGGTGCTG TGGGGAGACA CCTGGCTGCA GCCATTGTAG GGCATTCTCC
  Y
  TGAATACTTC TCCAGCCCCG CCCCTCCCCA TTCTGCTGAC TGATCACCTC TTTTTTCATG
  TGAGGCAGAG GAAGCCATGT TTCTAGGTTC CTTGGGTAGT AGTTGAATCA GGATTCAAAC
  ACTGGCTGGC TGGGGCCCCT TGAGCTTAGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318852	CHEV_4_130375968	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250196779					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130547364 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39265	transcription start site region 39265	1447 bp downstream
Tssr39266	transcription start site region 39266	1425 bp downstream
Tssr39267	transcription start site region 39267	1406 bp downstream
Tssr39268	transcription start site region 39268	1376 bp downstream
Tssr39269	transcription start site region 39269	1339 bp downstream
Tssr39270	transcription start site region 39270	1310 bp downstream
Tssr39271	transcription start site region 39271	1265 bp downstream
Tssr39272	transcription start site region 39272	1249 bp downstream
Tssr39273	transcription start site region 39273	1194 bp downstream
Tssr39274	transcription start site region 39274	1152 bp downstream
Tssr39275	transcription start site region 39275	1136 bp downstream
Tssr39276	transcription start site region 39276	1100 bp downstream
Tssr39277	transcription start site region 39277	1083 bp downstream
Tssr39278	transcription start site region 39278	1072 bp downstream
Tssr43599	transcription start site region 43599	1344 bp upstream
Tssr43600	transcription start site region 43600	1301 bp upstream
Tssr43601	transcription start site region 43601	1134 bp upstream