rs250199662 SNP Detail

Summary

• ID
  rs250199662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:184542857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTCAGGGTC CCTGGGTGGA GGGAGATTGA
  AGTTTCTTCT TGCGGATTGG CCGGCGTGAG AAATGCCTCG TCTAACACCA CAAGATTTGA
  AATAGCCACG AGAGGATGGA TAGAGAGATG TCCAACTCCA GGAAGCGTGA AACCCGGGAA
  Y
  TTCAGAGTTC CAGGTCCCCC GAGTTGGCTG GCGGAGGGTG AAGTTCATTT TTTCCGTTTC
  TCACCACCCC TTTCCCAGCC TCCGGTCTCT AGTCTGAGTA AGAAGGGACC GGCGAGCGGA
  CCCCGCTGAC CTCCCCACAC CCACACAGCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320169571	CHEV_1_186634539	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250199662					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184542857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	1 bp proximal
Gm70890	predicted gene, 70890	1264 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	Intron
Rr425290	regulatory region 425290	527 bp proximal
Rr425291	regulatory region 425291	1275 bp proximal
Rr425292	regulatory region 425292	1688 bp proximal
Rr425293	regulatory region 425293	1836 bp proximal
Tssr15650	transcription start site region 15650	320 bp downstream
Tssr15651	transcription start site region 15651	496 bp downstream
Tssr15652	transcription start site region 15652	510 bp downstream
Tssr15653	transcription start site region 15653	599 bp downstream
Tssr15654	transcription start site region 15654	626 bp downstream
Tssr15655	transcription start site region 15655	644 bp downstream