rs250210512 SNP Detail

Summary

• ID
  rs250210512
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48043621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGACGAG TGAGTCTGGT
  CGGGCCTCAG ACATTCTAAG CCATCCACCC ACCCATCCCG GCACTGCTGG TAGAGGGTGG
  GTGGGAGACC CTCCTCCAAA GTCATAGGTC ACCTATGCAG CAGTCTGGCA GCCCAGCCAA
  CTCCGAAGAA GAGAGGGTAT GGCCACACAG GGACAGTCAG CACATATGAT CTCAGACACC
  M
  GGGAGGGCCC CGGTAATCCA ACGCTACAGG TTAGAAGCTG TTTCACCATC CTTGCGACAG
  CCAGTGAGTG GCTCTCTGAC TTTCAGTGTG TCTAGAGCCT TCCTTGAGGA TTTGAGATGG
  CCTTGAATAG ACTCTAGGGT CCCCTTACTT CCCTTAAGAA CAACGTGGCC TCTGTATGCA
  GCCACCCGTG CCTCTGTGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398353030	MGP_WTSI_17_47869645	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250210512					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398353030	MGP_WTSI_17_47869645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48043621 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	1966 bp distal
Tssr5149	transcription start site region 5149	1208 bp downstream
Tssr145021	transcription start site region 145021	1995 bp downstream
Tssr145022	transcription start site region 145022	1968 bp downstream
Tssr145023	transcription start site region 145023	1930 bp downstream
Tssr145024	transcription start site region 145024	1828 bp downstream
Tssr145025	transcription start site region 145025	1465 bp downstream
Tssr145026	transcription start site region 145026	1225 bp downstream
Tssr145027	transcription start site region 145027	284 bp downstream
Tssr145028	transcription start site region 145028	243 bp downstream
Tssr145029	transcription start site region 145029	226 bp downstream
Tssr145030	transcription start site region 145030	258 bp upstream
Tssr145031	transcription start site region 145031	274 bp upstream
Tssr145032	transcription start site region 145032	282 bp upstream
Tssr145033	transcription start site region 145033	363 bp upstream
Tssr145034	transcription start site region 145034	365 bp upstream
Tssr145035	transcription start site region 145035	1055 bp upstream
Tssr145036	transcription start site region 145036	1063 bp upstream
Tssr145037	transcription start site region 145037	1107 bp upstream
Tssr145038	transcription start site region 145038	1117 bp upstream
Tssr145039	transcription start site region 145039	1482 bp upstream
Tssr145040	transcription start site region 145040	1506 bp upstream
Tssr145041	transcription start site region 145041	1543 bp upstream
Tssr145042	transcription start site region 145042	1561 bp upstream
Tssr145043	transcription start site region 145043	1616 bp upstream
Tssr145044	transcription start site region 145044	1633 bp upstream
Tssr145045	transcription start site region 145045	1643 bp upstream
Tssr145046	transcription start site region 145046	1662 bp upstream
Tssr145047	transcription start site region 145047	1710 bp upstream
Tssr145048	transcription start site region 145048	1742 bp upstream
Tssr148469	transcription start site region 148469	1933 bp upstream
Tssr148470	transcription start site region 148470	258 bp upstream
Tssr148471	transcription start site region 148471	236 bp upstream
Tssr148472	transcription start site region 148472	222 bp upstream
Tssr148473	transcription start site region 148473	208 bp upstream
Tssr148474	transcription start site region 148474	190 bp upstream
Tssr148475	transcription start site region 148475	331 bp downstream
Tssr148476	transcription start site region 148476	359 bp downstream
Tssr148477	transcription start site region 148477	390 bp downstream
Tssr148478	transcription start site region 148478	1102 bp downstream
Tssr148479	transcription start site region 148479	1140 bp downstream
Tssr148480	transcription start site region 148480	1618 bp downstream
Tssr148481	transcription start site region 148481	1648 bp downstream
Tssr148482	transcription start site region 148482	1779 bp downstream