rs250232836 SNP Detail

Summary

• ID
  rs250232836
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATTTT CTATAAAGTT
  ATAAAATATG TGATATGTGC TAAAGCAACT TTAGTACCAA ACATGGCAAC TGGTTGTAGA
  TAATTGTGTT TTCTATCTTC ATTCCTTACT TATACAGAAC TAAACCTAAC AACTAAACCA
  CAGAACTAAT CTTTGCTTAT AAGATTCAAA AATATTCATA ACTCCATCCC AAAAGATGTA
  S
  CTCTGTAACT CCTAGCTCAA TTCAACACCA CATGAATTCA TTGGGTAAAC TTTGTGTTGC
  ACTAATATTG TAATGCTCGG AGTATCAGAG TGAACACCTT CTCCATCCCA GGCCCACTCA
  CACAAGAAAG AACACAGGCT TTTGTAGGTT GCAAGTCCTG GTCTGGTTTA TTTATAAAGC
  AATAAATATT TGAAGCACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355315496	MGP_WTSI_2_113872878	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250232836					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355315496	MGP_WTSI_2_113872878	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877623 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	140 bp downstream
Rr562815	regulatory region 562815	1432 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	420 bp downstream
Tssr601	transcription start site region 601	430 bp downstream
Tssr19429	transcription start site region 19429	142 bp upstream
Tssr19430	transcription start site region 19430	237 bp upstream
Tssr19431	transcription start site region 19431	317 bp upstream
Tssr19432	transcription start site region 19432	413 bp upstream
Tssr19433	transcription start site region 19433	979 bp upstream
Tssr19434	transcription start site region 19434	1032 bp upstream
Tssr25660	transcription start site region 25660	169 bp downstream
Tssr25661	transcription start site region 25661	186 bp downstream
Tssr25662	transcription start site region 25662	243 bp downstream
Tssr25663	transcription start site region 25663	306 bp downstream
Tssr25664	transcription start site region 25664	336 bp downstream
Tssr25665	transcription start site region 25665	444 bp downstream
Tssr25666	transcription start site region 25666	1011 bp downstream
Tssr25667	transcription start site region 25667	1038 bp downstream
Tssr25668	transcription start site region 25668	1074 bp downstream
Tssr25669	transcription start site region 25669	1103 bp downstream