rs250243971 SNP Detail

Summary

• ID
  rs250243971
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTGTTGT CAATGATGTT
  GCTGTTTTGT ATACAAGGTC TCCCGTGGTT CCAGATTGGA CTCTAACTAG GTGTGCAGCC
  GAAGATGAGC TCAGACTTCT GATCCTTCTG CTTCTACTGC TGAGAGCTAG AATCACAGAT
  GTGCCCCACA CACCCGCAGC TAGTTTCTCA AAGACCTTTT GATACAGTGG CTCAAACAAC
  A
  GAGAATGGTA AAACTCACTT AAAGATGTTA AGAAACTATG ATATGGCCTT TATTGTAAAG
  CCCCTTCTTT GTCTTCTTCG TCCTCTTCTT CCTCTTCTTC TTCAACAGGG TTTCTCTGTG
  TAGACTTGGC TGGCTGCCCA GAAACTTGCT CTGTGTAACC CTGGCTGCCC TGGGACTCAC
  TGTGTAGACC AGACTGGCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759453	CHEV_11_79087997	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250243971					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165321 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	254 bp proximal
Gm44787	predicted gene 44787	547 bp upstream
Rr241861	regulatory region 241861	within coordinates
Rr251784	regulatory region 251784	252 bp distal
Rr251785	regulatory region 251785	1481 bp proximal
Tssr109475	transcription start site region 109475	604 bp upstream