rs250253566 SNP Detail

Summary

• ID
  rs250253566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:129326693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACGGATG GATTGCCGGC
  AGTAGCCAGC AGATCGCGGA GTTCCAGGGT CTCATGTCTG CAGGAGACTC TGAAGCTGCA
  TGGAAGCGTG CGGTTTGGGG GGTGCTCTGT GTGAGCCGCG GCCACGCGGG CATCTTTGTG
  TAGATTATAT AACATAGAAC ATATAATATG TGTACCTGTA ATAATATACG GGAGACAGAG
  R
  CATGTTACAA TCCAGCTATC CCACCTGTGT TGTCTCCCTG CTTTCGCTTA GATTTGGGGG
  TTCTGCTTGG CCTCCCGCAA CTGGAGCGTG CAAGGCAGTG GAGGGAGGAC CCGGTCTCCG
  CTCCCTTTAA CCCTCTTCAG CCCGCCTCTC TCTGGTCCTT TCCCTCTCCC CATCCCTCGT
  GTCCTTCCTT TCTCCTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359689129	MGP_WTSI_3_129235962	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250253566					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359689129	MGP_WTSI_3_129235962	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129326693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13814	CpG island 13814	within coordinates
Elovl6	ELOVL fatty acid elongase 6	Intron
Gm35986	predicted gene, 35986	656 bp upstream
Rr585018	regulatory region 585018	720 bp distal
Rr585019	regulatory region 585019	861 bp distal
Rr585020	regulatory region 585020	718 bp distal
Rr585021	regulatory region 585021	648 bp distal
Rr585022	regulatory region 585022	within coordinates
Tssr31642	transcription start site region 31642	604 bp downstream
Tssr31643	transcription start site region 31643	534 bp downstream
Tssr31644	transcription start site region 31644	400 bp downstream
Tssr31645	transcription start site region 31645	609 bp upstream
Tssr35616	transcription start site region 35616	1045 bp upstream