rs250259348 SNP Detail

Summary

• ID
  rs250259348
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127224783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCAAGG ACTGCAATGA
  CATTAGGGTG TGAAACACCT TGCAAACTGT TAAGTGCCGT GGCAGTAGGG ATGGCAATAA
  ATGACACGCC TACGCTGGTT ACCACGGATA CCCCGTCTGC GCCCTGCCCA TTTGGATCCC
  AGCCTGCTGC AAAGTTTCAA AGTTTTCGTA CGCTCTTGGG GGCCCCCCTC CCGCCCTGTT
  Y
  GCATCCCTGA TGGCATTTTC CAGGGAGGCA GTGTATCTTT GAGACAGTCT TTCGGGGCTC
  ACACTGTGCT GGCCACCGGA AGGGACACAA CCAGGAAAAG AAATCTCAGG GGCAAGGATG
  GTGTTTGGAG AGATTTTAGA TGACCCAGTC TGCCCAAAGG AGTGTGAAGC AGGGTGGGAG
  GCCCAGCTTG TGAAGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363174067	MGP_WTSI_4_127008234	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250259348					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363174067	MGP_WTSI_4_127008234	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127224783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14848	CpG island 14848	within coordinates
Gjb3	gap junction protein, beta 3	150 bp upstream
Gm40251	predicted gene, 40251	within coordinates
Rr599859	regulatory region 599859	1840 bp distal
Rr599860	regulatory region 599860	1517 bp distal
Rr599861	regulatory region 599861	773 bp distal
Rr599862	regulatory region 599862	157 bp distal
Rr599863	regulatory region 599863	within coordinates
Tssr43418	transcription start site region 43418	1835 bp upstream
Tssr43419	transcription start site region 43419	364 bp upstream
Tssr43420	transcription start site region 43420	204 bp upstream
Tssr43421	transcription start site region 43421	145 bp upstream