rs250263366 SNP Detail

Summary

• ID
  rs250263366
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150699462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAACTA AGTCTATTAC
  AGACTGAACA CCCCAAGTGT GTAAAACCAG ATCCTACGAA GCCTTGAACT AAGTTCTGAA
  GCCTGAGACA TGCCTCCCAG CTGCCTGTGT CTTGGCTCTA CTCTCACATG AGCTGGGCCC
  TCACAGCACC TTCTACCTGT CCAAACCTTG CCTGCTGTCT CACAGCATCA AGCCAGCCTT
  S
  CAAGTCTCGA GCTCGCAAAC ACACAAGGGC CAGACTCACT CTGTAAGTCA GCCTTGCCAA
  AGATCTGGGG AGGAGTCTTC AACCCATCCC AGCATTGACC ACAGCCATTT TTAATGCCTC
  CCACACTCCT TTGCCTCATC TTAGGTATAA AAATGTTTTT TAAAAAAAGG TTATTTTTAC
  TAAACACACC AGGAACCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356125181	MGP_WTSI_2_150683278	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250263366					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356125181	MGP_WTSI_2_150683278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150699462 () rs orientation: forward

Symbol	Name	Function Class
Abhd12	abhydrolase domain containing 12	within coordinates
Tssr26719	transcription start site region 26719	1841 bp upstream
Tssr26720	transcription start site region 26720	1822 bp upstream
Tssr26721	transcription start site region 26721	1768 bp upstream
Tssr26722	transcription start site region 26722	1694 bp upstream
Tssr26723	transcription start site region 26723	1596 bp upstream
Tssr26724	transcription start site region 26724	1512 bp upstream
Tssr26725	transcription start site region 26725	1472 bp upstream
Tssr26726	transcription start site region 26726	1413 bp upstream
Tssr26727	transcription start site region 26727	1381 bp upstream
Tssr26728	transcription start site region 26728	1285 bp downstream
Tssr26729	transcription start site region 26729	1331 bp downstream