rs250285825 SNP Detail

Summary

• ID
  rs250285825
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTGTTTG TCTTGAGACC
  TTGTTTCCGG TAGTCCAGAC TTGCTTCAAA TCTAAAAATG TAGCCAAGAA TGAACTTGAA
  CTTTGGTATT CCCGTCTTAT TCCCTAAGAG CTGGGATCAC AGGTGTGCCC ACCATACCCA
  GTCTGGGAAT AGAACCCAAG GCTTTGTGCA TCCTAGACAT CCACTCTTCC AATGACTCCT
  R
  CTTCCCTCTC TTTCTTTTTG AAACAGGAGC TCACTAAGTA GCCCAGGCTG GCCTGGAACT
  TGTAATTCTC CGGTCTCAGA CTCCCAAATT GGGAGGGGGC TATACACTTA TCACTTGAGC
  CCCCTCCCCT TTTCCTTCTT TCCTTTTTAT GATTTTTTTT TGTTTTTGTT TTTGCTTTTG
  TTTTGTTTTG ACAGGGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323109004	CHEV_9_96339652	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250285825					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321286 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22164	CpG island 22164	1014 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	392 bp downstream
Rr368835	regulatory region 368835	910 bp downstream
Rr684963	regulatory region 684963	1543 bp distal
Rr684964	regulatory region 684964	193 bp distal
Rr684965	regulatory region 684965	1395 bp distal
Tssr90963	transcription start site region 90963	1007 bp upstream