rs250286878 SNP Detail

Summary

• ID
  rs250286878
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52147958 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTACCG ACCCCGCCTA
  GCTCCCCAGT CCTAGGCCTG CCCCTCCTTT CTTCACCCCA CAGAAGCCTC TGTCCAAGGC
  CAGAGAGGAG CAGGACTTCA GTGCTGTGGT CCTCTCTTGG TCTGCGGAAA CAGCCTGGTT
  AGCCTGCCCT TCCTTCCTCT AAGGAGCGAA TCAGGGGCTT CTTCAAGGAG AGGACAGAGC
  W
  GCAGAGCCTC CTGCTTGCCT TGCTGGCCTG AACTTCCTCT CTATTTTACT CGGCCAGCTT
  ATTTCCTGGC CCATCAGACA ACAAGCTTCC TGTGAGCGGG TGCCACTATC TTGATTCCTT
  CAGTCGCTGG AAAATGTAGG AGACCTAGTG TATGCATGCA TCCTGCCTGT GTGACCAGCC
  ATTAGCTTCT ACTAACCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss368308253	MGP_WTSI_6_52120977	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs250286878					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308253	MGP_WTSI_6_52120977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52147958 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17415	CpG island 17415	1902 bp distal
Cpgi17416	CpG island 17416	within coordinates
Cpgi17417	CpG island 17417	1382 bp proximal
Gm15050	predicted gene 15050	1903 bp upstream
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Hoxaas2	Hoxa cluster antisense RNA 2	1527 bp downstream
Rr630350	regulatory region 630350	1413 bp proximal
Rr630351	regulatory region 630351	1914 bp proximal
Tssr56504	transcription start site region 56504	1832 bp upstream
Tssr56505	transcription start site region 56505	1897 bp upstream
Tssr56506	transcription start site region 56506	1969 bp upstream