rs250297180 SNP Detail

Summary

• ID
  rs250297180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79754401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTGGCT GAATTTTCAA
  GTGTTAACTC CACCGGACCC TCTAAAATTG GGTATCCATG CCACCCATCC ACTGATCCCA
  CCCTATGCTA TCTTTTCATT TTTTTTTTTT TTAAAAAAGA TTTATTTCCA TTAGGCTGTT
  TTAAGGGAGT ATGTGAGAGT CTGTAACGTC CAGACTCAAG GTGATGGGGT GAGAGAGTCA
  R
  TCTTTCAGTT ACAAAAGCCT GGGGAATTTT ATACAGAACC AAACGTAGTT TAATACACAA
  AAGAAAGTGG TTAGTGCAAC CTATTTCCTT AAAAAAAAAT CTGTAAAATA ATGTTTCAAG
  AGCGGGGGGG GGCACTTTTC CACCACCCCC CTTGATTGGG CGACTAGCGG GATAAATTCG
  AAGAAGTCCA TCCCACCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375274852	MGP_WTSI_8_81551671	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs250297180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375274852	MGP_WTSI_8_81551671	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79754401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20619	CpG island 20619	130 bp proximal
Cpgi20620	CpG island 20620	915 bp proximal
Rr186908	regulatory region 186908	within coordinates
Rr400985	regulatory region 400985	534 bp upstream
Tssr2612	transcription start site region 2612	579 bp upstream
Tssr78123	transcription start site region 78123	197 bp upstream
Tssr78124	transcription start site region 78124	406 bp upstream
Tssr78125	transcription start site region 78125	481 bp upstream
Tssr78126	transcription start site region 78126	545 bp upstream
Tssr78127	transcription start site region 78127	793 bp upstream
Tssr78128	transcription start site region 78128	857 bp upstream
Zfp827	zinc finger protein 827	665 bp upstream