rs250301620 SNP Detail

Summary

• ID
  rs250301620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTCCTCC CAAAGGCTCT
  GGGAGGTGGG CACAGGCAGT CAGTGTGGTC ATGAAGCTGC TAACTGAGGG AGCGCGCTGA
  GATGGACCCA GCCTGGGGAT GGATGTGTGA CCACTGTTCC AGGCTCCTGC TCCTTCCTGA
  GCCGCCTGAC TTAGCTCTGC CGCTAGTCTC CCTCCAACTC TGCTTTAAGC CTCTCCCTCA
  R
  GAAACTGGTG CCCTCCTCTA AAATGTCACT GTTCTCAGGA GGCAGAGGCA GAGGCAGGCG
  GATTTCTGAG TTCAAGGCCA GCCTGGTCGA CAAAGTGAGT TCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CTTGTCTTGA AAAAACAAAC AAACAAAAAC CCCCAAAACA AACAAAAACC
  AACCAACCAA ACAAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318835	CHEV_4_130373746	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs250301620					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545142 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	978 bp downstream
Tssr39264	transcription start site region 39264	920 bp downstream
Tssr39265	transcription start site region 39265	760 bp upstream
Tssr39266	transcription start site region 39266	782 bp upstream
Tssr39267	transcription start site region 39267	800 bp upstream
Tssr39268	transcription start site region 39268	824 bp upstream
Tssr39269	transcription start site region 39269	871 bp upstream
Tssr39270	transcription start site region 39270	896 bp upstream
Tssr39271	transcription start site region 39271	935 bp upstream
Tssr39272	transcription start site region 39272	957 bp upstream
Tssr39273	transcription start site region 39273	1017 bp upstream
Tssr39274	transcription start site region 39274	1059 bp upstream
Tssr39275	transcription start site region 39275	1075 bp upstream
Tssr39276	transcription start site region 39276	1111 bp upstream
Tssr39277	transcription start site region 39277	1127 bp upstream
Tssr39278	transcription start site region 39278	1140 bp upstream
Tssr43599	transcription start site region 43599	858 bp downstream
Tssr43600	transcription start site region 43600	881 bp downstream
Tssr43601	transcription start site region 43601	938 bp downstream